RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PARP10Q53GL7 1025 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 BLZF1Q9H2G9 400 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 NBNO60934 754 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 CALB1P05937 261 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 TRMT5Q32P41 509 aaKnown RBP13.71□□□□□ -0.21
COL6A3-206ENST00000409809 KCTD6Q8NC69 237 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 SEPT1Q8WYJ6 367 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 CDY2AQ9Y6F7 541 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 CDY1Q9Y6F8 540 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 SHROOM2Q13796 1616 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 NPATQ14207 1427 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 A8MXQ7 604 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 RGS2P41220 211 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 SMARCAL1Q9NZC9 954 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 PIK3CAP42336 1068 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 ARMC3Q5W041 872 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 ZBTB8OSQ8IWT0 167 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 ADNPQ9H2P0 1102 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 SMCO2A6NFE2 343 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 PTCD1O75127 700 aaKnown RBP13.71□□□□□ -0.21
COL6A3-206ENST00000409809 FOSP01100 380 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-206ENST00000409809 SERPINB8P50452 374 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 ATAD3BQ5T9A4 648 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 DNAJC24Q6P3W2 148 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 C11orf57Q6ZUT1 292 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-206ENST00000409809 ARMCX6Q7L4S7 300 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 RFX6Q8HWS3 928 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 KLHL25Q9H0H3 589 aa13.71□□□□□ -0.21
COL6A3-206ENST00000409809 LIMA1Q9UHB6 759 aaKnown RBP13.71□□□□□ -0.21
COL6A3-206ENST00000409809 NOP56O00567 594 aaKnown RBP13.71□□□□□ -0.22
COL6A3-206ENST00000409809 RTL3Q8N8U3 475 aaKnown RBP13.71□□□□□ -0.22
COL6A3-206ENST00000409809 DNAAF3Q8N9W5 541 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 AZI2Q9H6S1 392 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 RSL24D1Q9UHA3 163 aaKnown RBP13.71□□□□□ -0.22
COL6A3-206ENST00000409809 TRIM24O15164 1050 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 PDE9AO76083 593 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 DLGAP3O95886 979 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 IFRD2Q12894 506 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-206ENST00000409809 ZNF654Q8IZM8 581 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 PPM1KQ8N3J5 372 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 ACRBPQ8NEB7 543 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 MCRS1Q96EZ8 462 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 HPCAL4Q9UM19 191 aa13.71□□□□□ -0.22
COL6A3-206ENST00000409809 NBPF26B4DH59 902 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KRT1P04264 644 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KBTBD12Q3ZCT8 623 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 TJAP1Q5JTD0 557 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KHDRBS2Q5VWX1 349 aaKnown RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 NBPF15Q8N660 670 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 STOML2Q9UJZ1 356 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 TCP11X1B4DZS4 312 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 TAP1Q03518 808 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 BTNL9Q6UXG8 535 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 NLRP3Q96P20 1036 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 JAK2O60674 1132 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 RECQLP46063 649 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KDM7AQ6ZMT4 941 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 CDCA7Q9BWT1 371 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 RCAN1P53805 252 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 R3HDM1Q15032 1099 aaKnown RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 DARS2Q6PI48 645 aaKnown RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KCNV2Q8TDN2 545 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 ANGPT2O15123 496 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 MYCNP04198 464 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 PMLP29590 882 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 KLHL23Q8NBE8 558 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 FRMD8Q9BZ67 464 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 MMADHCQ9H3L0 296 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-206ENST00000409809 CLPTM1O96005 669 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 GNAT1P11488 350 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 WDR19Q8NEZ3 1342 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 TRIM66O15016 1216 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 SLC9A1P19634 815 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 TTC8Q8TAM2 541 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 C17orf50Q8WW18 174 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 CHAMP1Q96JM3 812 aa13.7□□□□□ -0.22
COL6A3-206ENST00000409809 CCNE1P24864 410 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TPP2P29144 1249 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 PHACTR3Q96KR7 559 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ZSCAN10Q96SZ4 725 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 CFAP69A5D8W1 941 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ZNF263O14978 683 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 MOCS3O95396 460 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TTC39CQ8N584 583 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TNNQ9UQP3 1299 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 KDM5CP41229 1560 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ZBED1O96006 694 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 HSPD1P10809 573 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 PTGDRQ13258 359 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 YARSP54577 528 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 VCPP55072 806 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ROR2Q01974 943 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TTC17Q96AE7 1141 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ZBTB3Q9H5J0 574 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ZNF556Q9HAH1 456 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 DDX25Q9UHL0 483 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 RFX7Q2KHR2 1363 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 FKBP6O75344 327 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 SUPT3HO75486 399 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms