RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RASGRF1Q13972 1273 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 KRT24Q2M2I5 525 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 GRAMD1BQ3KR37 738 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 AASDHQ4L235 1098 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 KIAA1755Q5JYT7 1200 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RAB42Q8N4Z0 105 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RDH13Q8NBN7 331 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RFFLQ8WZ73 363 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 PLEKHF1Q96S99 279 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 COA1Q9GZY4 146 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 UBE2TQ9NPD8 197 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ABHD10Q9NUJ1 306 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 PKD2L2Q9NZM6 624 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 BFARQ9NZS9 450 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ADAM21Q9UKJ8 722 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SAMD9Q5K651 1589 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 NLRP1Q9C000 1473 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF197O14709 1029 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 TNPO2O14787 897 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 HSPA1AP0DMV8 641 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 HSPA1BP0DMV9 641 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 CYP2C19P33261 490 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 BAG6P46379 1132 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 IFNAR2P48551 515 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 CEBPAP49715 358 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 FAM47CQ5HY64 1035 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 LRRC31Q6UY01 552 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SEPT8Q92599 483 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 PGBD1Q96JS3 809 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 MRPL46Q9H2W6 279 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ZFYVE16Q7Z3T8 1539 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 MTSS1O43312 755 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SNX2O60749 519 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 H2AFYO75367 372 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 DDIT3P35638 169 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 HSPA9P38646 679 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 USP11P51784 963 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 DEFA1P59665 94 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 DEFA3P59666 94 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 GTF2IP78347 998 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 MRPS25P82663 173 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 MRPS35P82673 323 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 TTC23LQ6PF05 361 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF594Q96JF6 807 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 CEP170P1Q96L14 293 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 CCDC134Q9H6E4 229 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ATP6V0A4Q9HBG4 840 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SEPT9Q9UHD8 586 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ITGB1BP2Q9UKP3 347 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF608Q9ULD9 1512 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RASA4BC9J798 803 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 STXBP3O00186 592 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RASA4O43374 803 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 PDIA5Q14554 519 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 BBS9Q3SYG4 887 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SYCP2LQ5T4T6 812 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 OR6B2Q6IFH4 312 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 PARP9Q8IXQ6 854 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SCFD1Q8WVM8 642 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SYN2Q92777 582 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 DCPSQ96C86 337 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 FAF2Q96CS3 445 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 RMDN1Q96DB5 314 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 NAF1Q96HR8 494 aaKnown RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 TRPC5Q9UL62 973 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-203ENST00000409050 CAPN11Q9UMQ6 739 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 SHROOM2Q13796 1616 aa6.5□□□□□ -1.37
SCN1A-203ENST00000409050 H3BRJ5 948 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 TBX3O15119 743 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 A1BGP04217 495 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CCND1P24385 295 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 VPS41P49754 854 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 LAMC2Q13753 1193 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PFKFB3Q16875 520 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 SPOUT1Q5T280 376 aaKnown RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C16orf87Q6PH81 154 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C16orf89Q6UX73 402 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 MAEAQ7L5Y9 396 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 FAM133AQ8N9E0 248 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CCNYQ8ND76 341 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 TTC16Q8NEE8 873 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 COG1Q8WTW3 980 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CEP95Q96GE4 821 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 NEUROG2Q9H2A3 272 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PCDHB8Q9UN66 801 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PITPNM2Q9BZ72 1349 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 KANSL1LA0AUZ9 987 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 LRRIQ3A6PVS8 624 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 MOCS3O95396 460 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ITIH2P19823 946 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PSMA2P25787 234 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 PHKA2P46019 1235 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 EFNA5P52803 228 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 POLE2P56282 527 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 CYP4F22Q6NT55 531 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 NLRP14Q86W24 1093 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 C17orf53Q8N3J3 647 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-203ENST00000409050 DDI1Q8WTU0 396 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 DIABLOQ9NR28 239 aa6.49□□□□□ -1.37
SCN1A-203ENST00000409050 ADAM22Q9P0K1 906 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms