RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ANKRD23Q86SG2 305 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 CARD6Q9BX69 1037 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 THSD7AQ9UPZ6 1657 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 RPS6KA5O75582 802 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 TRIM49P0CI25 452 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 TRIM49CP0CI26 452 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 GCLMP48507 274 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 EMC2Q15006 297 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 LLGL1Q15334 1064 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 FAM186BQ8IYM0 893 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 ELMO3Q96BJ8 720 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 KCND1Q9NSA2 647 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 PRG3Q9Y2Y8 225 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 ESYT2A0FGR8 921 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 SMARCA1P28370 1054 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PHKA2P46019 1235 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 ADKP55263 362 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 EVCP57679 992 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 COASYQ13057 564 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 KCNV1Q6PIU1 500 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PPM1EQ8WY54 764 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 ACCSQ96QU6 501 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 FAM53CQ9NYF3 392 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 LUC7L2Q9Y383 392 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 FHOD1Q9Y613 1164 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 TRIOBPQ9H2D6 2365 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 ZC3H4Q9UPT8 1303 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 DCDC2CA8MYV0 355 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 KCNJ18B7U540 433 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 NEBLO76041 1014 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 CASQ1P31415 396 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 KCNJ12Q14500 433 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PLCB4Q15147 1175 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 METTL7BQ6UX53 244 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 RRAGAQ7L523 313 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 CCDC60Q8IWA6 550 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PRPF31Q8WWY3 499 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 IWS1Q96ST2 819 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 RUSC1Q9BVN2 902 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 GCOM2Q9BZD3 368 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 AGO4Q9HCK5 861 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 ARFGAP3Q9NP61 516 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 LUC7LQ9NQ29 371 aaKnown RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 RNF216Q9NWF9 866 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-205ENST00000392004 RNF186Q9NXI6 227 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 ATP8B1O43520 1251 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 SLC35G1Q2M3R5 365 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PCNX4Q63HM2 1172 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 GOLGA6L1Q8N7Z2 621 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 GPRASP2Q96D09 838 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 R3HDMLQ9H3Y0 253 aa11.22□□□□□ -0.61
COL6A3-205ENST00000392004 PTPRZ1P23471 2315 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-205ENST00000392004 PHLPP2Q6ZVD8 1323 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 C2CD2LO14523 706 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 KIF3CO14782 793 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 TNNC2P02585 160 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 INHAP05111 366 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 PRCPP42785 496 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 STK4Q13043 487 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 CCDC42Q96M95 316 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 RIT2Q99578 217 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 PTPN18Q99952 460 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 MED10Q9BTT4 135 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 A0A087WZ62 844 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-205ENST00000392004 OATP04181 439 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 FGRP09769 529 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 OAS2P29728 719 aaKnown RBP11.21□□□□□ -0.61
COL6A3-205ENST00000392004 TRIM32Q13049 653 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 CNOT6LQ96LI5 555 aaKnown RBP11.21□□□□□ -0.61
COL6A3-205ENST00000392004 FDXACB1Q9BRP7 624 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-205ENST00000392004 TMEM39AQ9NV64 488 aa11.21□□□□□ -0.61
COL6A3-205ENST00000392004 SOWAHBA6NEL2 793 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 EFCAB8A8MWE9 144 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 ITGBL1O95965 494 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-205ENST00000392004 PLA2G4AP47712 749 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 LEKR1Q6ZMV7 388 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 GSDMAQ96QA5 445 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 APBA2Q99767 749 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 LSM14BQ9BX40 385 aaKnown RBP11.21□□□□□ -0.62
COL6A3-205ENST00000392004 RASSF4Q9H2L5 321 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 RPF1Q9H9Y2 349 aaKnown RBP11.21□□□□□ -0.62
COL6A3-205ENST00000392004 LZTFL1Q9NQ48 299 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 BCCIPQ9P287 314 aaKnown RBP eCLIP11.21□□□□□ -0.62
COL6A3-205ENST00000392004 ATRNL1Q5VV63 1379 aa11.21□□□□□ -0.62
COL6A3-205ENST00000392004 C17orf102A2RUQ5 167 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SLC15A5A6NIM6 579 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 RBAK-RBAKDNI3L0D1 243 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 LPXNO60711 386 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SUPT20HL2P0C7V6 817 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 PIK3CAP42336 1068 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 KCNJ6P48051 423 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 FUT2Q10981 343 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 DNERQ8NFT8 737 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 HASPINQ8TF76 798 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 TRIM9Q9C026 710 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 PTCH2Q9Y6C5 1203 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 TLR3O15455 904 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 C4AP0C0L4 1744 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms