RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 BLZF1Q9H2G9 400 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 RMND1Q9NWS8 449 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 HDAC6Q9UBN7 1215 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PP2D1A8MPX8 630 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PPP1R3GB7ZBB8 358 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 GAS2O43903 313 aaKnown RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 CAPN15O75808 1086 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CLTBP09497 229 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 ATN1P54259 1190 aaPredicted RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 PSMC6P62333 389 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PRKCEQ02156 737 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 TLE2Q04725 743 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 RBL2Q08999 1139 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PTK7Q13308 1070 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 HSP90AA4PQ58FG1 418 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 HYIQ5T013 277 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 RRAGBQ5VZM2 374 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 TRIM50Q86XT4 487 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 NME8Q8N427 588 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 RASSF8Q8NHQ8 419 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CAGE1Q8TC20 777 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 LXNQ9BS40 222 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 INTS13Q9NVM9 706 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PRKAG2Q9UGJ0 569 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 TRPC6Q9Y210 931 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 NOD1Q9Y239 953 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 TELO2Q9Y4R8 837 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 POTEMA6NI47 508 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 PITPNM1O00562 1244 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 NRDCO43847 1150 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 ZNF862O60290 1169 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 SPATA31C1P0DKV0 1188 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 INSRRP14616 1297 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 ATP4AP20648 1035 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 YWHABP31946 246 aaKnown RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 FAAP100Q0VG06 881 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 BFSP2Q13515 415 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 GRIK4Q16099 956 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 PTGISQ16647 500 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 TPD52L1Q16890 204 aaPredicted RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 TRIM60Q495X7 471 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 NAALADL2Q58DX5 795 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 FAM47CQ5HY64 1035 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 SPATA1Q5VX52 437 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 KLHL10Q6JEL2 608 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 RSPH3Q86UC2 560 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 SERINC5Q86VE9 423 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 CATSPER3Q86XQ3 398 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 TPH2Q8IWU9 490 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 SMYD4Q8IYR2 804 aaPredicted RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 RETREG2Q8NC44 543 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 C16orf45Q96MC5 204 aaPredicted RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 UIMC1Q96RL1 719 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 SAMSN1Q9NSI8 373 aaKnown RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 DBR1Q9UK59 544 aaKnown RBP11.28□□□□□ -0.6
VPS53-202ENST00000389040 PCDHA2Q9Y5H9 948 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 FRMPD3Q5JV73 1810 aa11.28□□□□□ -0.6
VPS53-202ENST00000389040 KIAA0355O15063 1070 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 B4GALT4O60513 344 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 PQBP1O60828 265 aaKnown RBP11.27□□□□□ -0.6
VPS53-202ENST00000389040 RPN1P04843 607 aaKnown RBP11.27□□□□□ -0.6
VPS53-202ENST00000389040 MYL1P05976 194 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 MARK3P27448 753 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 TMOD1P28289 359 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 MLLT1Q03111 559 aaPredicted RBP11.27□□□□□ -0.6
VPS53-202ENST00000389040 TARBP2Q15633 366 aaKnown RBP11.27□□□□□ -0.6
VPS53-202ENST00000389040 BANK1Q8NDB2 785 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 MYRIPQ8NFW9 859 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 DPF3Q92784 378 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 DYDC2Q96IM9 177 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 KCND1Q9NSA2 647 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 RGL1Q9NZL6 768 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 ATP11BQ9Y2G3 1177 aa11.27□□□□□ -0.6
VPS53-202ENST00000389040 SCN10AQ9Y5Y9 1956 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 SMIM35A0A1B0GVV1 85 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 STBD1O95210 358 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 CCT6AP40227 531 aaKnown RBP11.27□□□□□ -0.61
VPS53-202ENST00000389040 RFC5P40937 340 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 ZNF658Q5TYW1 1059 aaPredicted RBP11.27□□□□□ -0.61
VPS53-202ENST00000389040 GDF6Q6KF10 455 aaPredicted RBP11.27□□□□□ -0.61
VPS53-202ENST00000389040 SNX29Q8TEQ0 813 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 LMBR1Q8WVP7 490 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 CALML4Q96GE6 196 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 CUEDC2Q9H467 287 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 MAGEF1Q9HAY2 307 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 TMEM39AQ9NV64 488 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 SETD4Q9NVD3 440 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 KCND2Q9NZV8 630 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 TBX21Q9UL17 535 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 DNM3Q9UQ16 869 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 CTNND2Q9UQB3 1225 aa11.27□□□□□ -0.61
VPS53-202ENST00000389040 USP27XA6NNY8 438 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 KCNJ6P48051 423 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 DNM2P50570 870 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 STX17P56962 302 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 TBC1D8BQ0IIM8 1120 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 UGCGQ16739 394 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 MARCH8Q5T0T0 291 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 CDKAL1Q5VV42 579 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 ANO5Q75V66 913 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms