RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 SMC5Q8IY18 1101 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 IFNL3Q8IZI9 196 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 LGI4Q8N135 537 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 TMEM57Q8N5G2 664 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 UHMK1Q8TAS1 419 aaKnown RBP5.94□□□□□ -1.46
USP48-202ENST00000374730 DDX1Q92499 740 aaKnown RBP5.94□□□□□ -1.46
USP48-202ENST00000374730 ARMC5Q96C12 935 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 PHACTR3Q96KR7 559 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 TANGO6Q9C0B7 1094 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 CHMP4BQ9H444 224 aaKnown RBP5.94□□□□□ -1.46
USP48-202ENST00000374730 ZBTB40Q9NUA8 1239 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 NOB1Q9ULX3 412 aaKnown RBP5.94□□□□□ -1.46
USP48-202ENST00000374730 PHRF1Q9P1Y6 1649 aaKnown RBP5.94□□□□□ -1.46
USP48-202ENST00000374730 USP19O94966 1318 aa5.94□□□□□ -1.46
USP48-202ENST00000374730 SBNO1A3KN83 1393 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 KDRP35968 1356 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 LTN1O94822 1766 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 SETD1BQ9UPS6 1966 aaKnown RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 K7ESM1 405 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 DDX3XO00571 662 aaKnown RBP eCLIP5.93□□□□□ -1.46
USP48-202ENST00000374730 ADRB1P08588 477 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 HMOX1P09601 288 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 SPIRE1Q08AE8 756 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 EIF4A2Q14240 407 aaKnown RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 RRS1Q15050 365 aaKnown RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 YOD1Q5VVQ6 348 aaPredicted RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 ITPRIPQ8IWB1 547 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 TXNDC5Q8NBS9 432 aaKnown RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 LCORQ96JN0 433 aaPredicted RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 KRTAP4-11Q9BYQ6 195 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 KRTAP4-2Q9BYR5 136 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 SIRPGQ9P1W8 387 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 ADAMTSL3P82987 1691 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 FAM208AQ9UK61 1670 aaKnown RBP5.93□□□□□ -1.46
USP48-202ENST00000374730 ABCC4O15439 1325 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 FLT4P35916 1363 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 KIAA0232Q92628 1395 aa5.93□□□□□ -1.46
USP48-202ENST00000374730 FAM47E-STBD1D6RA91 191 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 SLC27A2O14975 620 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 ADCY3O60266 1144 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 SOD2P04179 222 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 ITGB3P05106 788 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 GNAT1P11488 350 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 NFKB2Q00653 900 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 MTERF2Q49AM1 385 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 PRAMEF18Q5VWM3 479 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 MCTP2Q6DN12 878 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 SPATC1Q76KD6 591 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 MAMDC2Q7Z304 686 aaPredicted RBP5.92□□□□□ -1.46
USP48-202ENST00000374730 SCUBE1Q8IWY4 988 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 THEMISQ8N1K5 641 aaPredicted RBP5.92□□□□□ -1.46
USP48-202ENST00000374730 ZSWIM3Q96MP5 696 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 ALG1Q9BT22 464 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 NWD1Q149M9 1564 aa5.92□□□□□ -1.46
USP48-202ENST00000374730 PLATP00750 562 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 SSRP1Q08945 709 aaKnown RBP5.91□□□□□ -1.46
USP48-202ENST00000374730 TUSC3Q13454 348 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 SF3A1Q15459 793 aaKnown RBP5.91□□□□□ -1.46
USP48-202ENST00000374730 TWISTNBQ3B726 338 aaPredicted RBP5.91□□□□□ -1.46
USP48-202ENST00000374730 PROSER1Q86XN7 944 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 BORCS6Q96GS4 357 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 RBM15Q96T37 977 aaKnown RBP eCLIP5.91□□□□□ -1.46
USP48-202ENST00000374730 API5Q9BZZ5 524 aaKnown RBP5.91□□□□□ -1.46
USP48-202ENST00000374730 L2HGDHQ9H9P8 463 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 UPF2Q9HAU5 1272 aaKnown RBP5.91□□□□□ -1.46
USP48-202ENST00000374730 DLL4Q9NR61 685 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 WASF3Q9UPY6 502 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 RTL1A6NKG5 1358 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 RGS12O14924 1447 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 CRB1P82279 1406 aa5.91□□□□□ -1.46
USP48-202ENST00000374730 BLACEA4D250 179 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 CHL1O00533 1208 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 AQP7O14520 342 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 WNT9AO14904 365 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 FAHP16930 419 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 DEKP35659 375 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 EPHA5P54756 1037 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 MLLT6P55198 1093 aaPredicted RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 KRTAP10-2P60368 255 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 SUMO1P63165 101 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 NUCB1Q02818 461 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 BECN1Q14457 450 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 SURF1Q15526 300 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 LONRF2Q1L5Z9 754 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 PAN2Q504Q3 1202 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 VASNQ6EMK4 673 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 SULT6B1Q6IMI4 303 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 DBX2Q6ZNG2 339 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 LRP10Q7Z4F1 713 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 PLEKHH3Q7Z736 793 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 TSPYL6Q8N831 410 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 DTX3Q8N9I9 347 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 ZBTB38Q8NAP3 1195 aaPredicted RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 CLEC4DQ8WXI8 215 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 ZCCHC14Q8WYQ9 949 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 UBXN4Q92575 508 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 PTPRN2Q92932 1015 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 GCC1Q96CN9 775 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 THUMPD2Q9BTF0 503 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 PPP1R1BQ9UD71 204 aaPredicted RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms