RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MAFO75444 373 aaPredicted RBP24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 EPHA7Q15375 998 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 C8orf34Q49A92 452 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 NAALADL2Q58DX5 795 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 TCEAL5Q5H9L2 206 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 DIS3L2Q8IYB7 885 aaKnown RBP24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 SLFN12Q8IYM2 578 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 TMEM161AQ9NX61 479 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 PLAGL2Q9UPG8 496 aa24.35■■□□□ 1.49
CCDC28B-201ENST00000373602 BAG4O95429 457 aaKnown RBP24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 DNM2P50570 870 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 SPIRE1Q08AE8 756 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 TRIM29Q14134 588 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 FAM102BQ5T8I3 360 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 NLRP7Q8WX94 980 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 SCLT1Q96NL6 688 aa24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 NECAB3Q96P71 396 aaPredicted RBP24.34■■□□□ 1.49
CCDC28B-201ENST00000373602 KIAA1671Q9BY89 1806 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 ZSCAN20P17040 1043 aaPredicted RBP24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 FOSBP53539 338 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 COL19A1Q14993 1142 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 LEXMQ3ZCV2 418 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 PLA2G4FQ68DD2 849 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 JPH2Q9BR39 696 aaPredicted RBP24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 ATP6V0A4Q9HBG4 840 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 ALG13Q9NP73 1137 aaKnown RBP24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 CYP26B1Q9NR63 512 aa24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 WRAP73Q9P2S5 460 aaPredicted RBP24.33■■□□□ 1.49
CCDC28B-201ENST00000373602 FNDC1Q4ZHG4 1894 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 TBKBP1A7MCY6 615 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 ITGB1P05556 798 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 CAMK1Q14012 370 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 C4orf19Q8IY42 314 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 KIF2CQ99661 725 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 LXNQ9BS40 222 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 GCOM2Q9BZD3 368 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 SUCLA2Q9P2R7 463 aaPredicted RBP24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 PPME1Q9Y570 386 aa24.32■■□□□ 1.48
CCDC28B-201ENST00000373602 KCNA5P22460 613 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 NPEPPSP55786 919 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 NCAPH2Q6IBW4 605 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 ZNF410Q86VK4 478 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 CCDC83Q8IWF9 413 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 KLHL23Q8NBE8 558 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 SPPL3Q8TCT6 385 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 PABPC5Q96DU9 382 aaKnown RBP24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 LLPHQ9BRT6 129 aaKnown RBP24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 RGL1Q9NZL6 768 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 MYO7AQ13402 2215 aa24.31■■□□□ 1.48
CCDC28B-201ENST00000373602 ATG2AQ2TAZ0 1938 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 A0A087WZ62 844 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 FGFR1P11362 822 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 FGFR4P22455 802 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 RHPN2Q8IUC4 686 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 ZNF579Q8NAF0 562 aaKnown RBP24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 NEK9Q8TD19 979 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 DYDC2Q96IM9 177 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 CEP170P1Q96L14 293 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 FDXACB1Q9BRP7 624 aaPredicted RBP24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 RNF19AQ9NV58 838 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 NCOR1O75376 2440 aa24.3■■□□□ 1.48
CCDC28B-201ENST00000373602 WNT7AO00755 349 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 HOXA2O43364 376 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 NCK2O43639 380 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 CSDE1O75534 798 aaKnown RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 YWHABP31946 246 aaKnown RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 CALCRLQ16602 461 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 ECHDC2Q86YB7 292 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 EXOC8Q8IYI6 725 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 SLC7A3Q8WY07 619 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 ZSCAN31Q96LW9 406 aaPredicted RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 TMEM117Q9H0C3 514 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 DHX33Q9H6R0 707 aaKnown RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 ZSWIM4Q9H7M6 989 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 AAASQ9NRG9 546 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 TYW1Q9NV66 732 aaKnown RBP24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 PCDHA12Q9UN75 941 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 XIRP2A4UGR9 3374 aa24.29■■□□□ 1.48
CCDC28B-201ENST00000373602 A0A0U1RQF3 1178 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 NEMFO60524 1076 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 DNAJB1P25685 340 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 RFC5P40937 340 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 CYP4A11Q02928 519 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 CTTNQ14247 550 aaKnown RBP24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 SAFBQ15424 915 aaKnown RBP eCLIP24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 SPOUT1Q5T280 376 aaKnown RBP24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 OTUD6AQ7L8S5 288 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 CASD1Q96PB1 797 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 INO80BQ9C086 356 aaPredicted RBP24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 CHST12Q9NRB3 414 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 DACT1Q9NYF0 836 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 PCDHB12Q9Y5F1 795 aa24.28■■□□□ 1.48
CCDC28B-201ENST00000373602 SLITRK3O94933 977 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 SFPQP23246 707 aaKnown RBP eCLIP24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 POLGP54098 1239 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 GUCY1B3Q02153 619 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 HYAL1Q12794 435 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 CTC1Q2NKJ3 1217 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 ZNF598Q86UK7 904 aaKnown RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms