RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 MKRN4PQ13434 485 aaPredicted RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 NFIXQ14938 502 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 KNOP1Q1ED39 458 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 DENND2CQ68D51 928 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 MAEAQ7L5Y9 396 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 HOOK3Q86VS8 718 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 RTFDC1Q9BY42 306 aaPredicted RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 RAB17Q9H0T7 212 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 INTS9Q9NV88 658 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 RTCBQ9Y3I0 505 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 SFI1A8K8P3 1242 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 RSPH10B2B2RC85 870 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 EVI5O60447 810 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 RSPH10BP0C881 870 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 PRKCIP41743 596 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 PPP4CP60510 307 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 GSTO1P78417 241 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 SNX1Q13596 522 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 NBPF9Q3BBW0 867 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 FRMD5Q7Z6J6 570 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 NEK9Q8TD19 979 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 EPS8L3Q8TE67 593 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 ATXN2LQ8WWM7 1075 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 CUL5Q93034 780 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 TXLNGYQ9BZA5 131 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 PABPC3Q9H361 631 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 ZDHHC18Q9NUE0 388 aa14.84□□□□□ -0.03
USP49-201ENST00000373006 DBR1Q9UK59 544 aaKnown RBP14.84□□□□□ -0.03
USP49-201ENST00000373006 GHRP10912 638 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 PICALMQ13492 652 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 DUPD1Q68J44 220 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 C18orf8Q96DM3 657 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 DHX36Q9H2U1 1008 aaKnown RBP14.83□□□□□ -0.03
USP49-201ENST00000373006 PSTPIP2Q9H939 334 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 ABCF3Q9NUQ8 709 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 SAMD15Q9P1V8 674 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 CHORDC1Q9UHD1 332 aaPredicted RBP14.83□□□□□ -0.03
USP49-201ENST00000373006 AGAP1Q9UPQ3 857 aa14.83□□□□□ -0.03
USP49-201ENST00000373006 FGFR4P22455 802 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 SMARCA1P28370 1054 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 MRPL12P52815 198 aaKnown RBP14.83□□□□□ -0.04
USP49-201ENST00000373006 PTENP60484 403 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 MAP2K1Q02750 393 aaPredicted RBP14.83□□□□□ -0.04
USP49-201ENST00000373006 LRRC14Q15048 493 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 MAGEC3Q8TD91 643 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 MGARPQ8TDB4 240 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 SLC35C1Q96A29 364 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 REEP2Q9BRK0 252 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 YIPF3Q9GZM5 350 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 KDM3AQ9Y4C1 1321 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 GNPATO15228 680 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 DDX3YO15523 660 aaKnown RBP14.83□□□□□ -0.04
USP49-201ENST00000373006 MMP13P45452 471 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 SLC12A3P55017 1021 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 KLRC3Q07444 240 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 GIT2Q14161 759 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 TLDC1Q6P9B6 456 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 KCTD1Q719H9 257 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 PARD3BQ8TEW8 1205 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 ALG3Q92685 438 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 ARHGEF26Q96DR7 871 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 MTMR4Q9NYA4 1195 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 TAS2R14Q9NYV8 317 aa14.83□□□□□ -0.04
USP49-201ENST00000373006 USP17L10C9JJH3 530 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 LDHCP07864 332 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 STAT1P42224 750 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 LLGL1Q15334 1064 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 KIAA1755Q5JYT7 1200 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 PIGWQ7Z7B1 504 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 TAX1BP1Q86VP1 789 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 CATSPER3Q86XQ3 398 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 JAMLQ86YT9 394 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 NSMCE1Q8WV22 266 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 P3H4Q92791 437 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 ATP6V0A4Q9HBG4 840 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 PNMA6FA0A0J9YX94 578 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 NR3C1P04150 777 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 AKR1B1P15121 316 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 JAM2P57087 298 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 KCNJ2P63252 427 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 CYP4A11Q02928 519 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 SLC10A5Q5PT55 438 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 TPTE2Q6XPS3 522 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 PPP4R3CPQ6ZMV5 832 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 TRPM8Q7Z2W7 1104 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 PALB2Q86YC2 1186 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 ZC3H3Q8IXZ2 948 aaKnown RBP14.82□□□□□ -0.04
USP49-201ENST00000373006 CENPTQ96BT3 561 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 THAP2Q9H0W7 228 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 MLXIPLQ9NP71 852 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 NENFQ9UMX5 172 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 BCS1LQ9Y276 419 aa14.82□□□□□ -0.04
USP49-201ENST00000373006 CCDC169A6NNP5 214 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 TMEM110-MUSTN1A8MSY1 372 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 GCNT3O95395 438 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 PLS1Q14651 629 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 ZDHHC24Q6UX98 284 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 DPP8Q6V1X1 898 aaPredicted RBP14.81□□□□□ -0.04
USP49-201ENST00000373006 OTUD6AQ7L8S5 288 aa14.81□□□□□ -0.04
USP49-201ENST00000373006 FMNL3Q8IVF7 1028 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms