RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 TMEM174Q8WUU8 243 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ANKRD49Q8WVL7 239 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SHISA4Q96DD7 197 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 EXOC2Q96KP1 924 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SCLT1Q96NL6 688 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TAAR9Q96RI9 348 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 NUP88Q99567 741 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 IDI2Q9BXS1 227 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 ITM2BQ9Y287 266 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 RTCBQ9Y3I0 505 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 RBM8AQ9Y5S9 174 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 PASKQ96RG2 1323 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 DNAJC8O75937 253 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 DNTTP04053 509 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 NPR1P16066 1061 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 PDE6AP16499 860 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 GRK2P25098 689 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ADH7P40394 386 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 NOP2P46087 812 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 IREB2P48200 963 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 AK2P54819 239 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ORC1Q13415 861 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ANKRD1Q15327 319 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SUPT20HL1Q3ZLR7 823 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 CAVIN4Q5BKX8 364 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 CNNM4Q6P4Q7 775 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 HHIPL2Q6UWX4 724 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 ZER1Q7Z7L7 766 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 CNTD1Q8N815 330 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 PDCD7Q8N8D1 485 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 DRAXINQ8NBI3 349 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 DEPTORQ8TB45 409 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 KLHDC4Q8TBB5 520 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TMX3Q96JJ7 454 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TRIM56Q9BRZ2 755 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 ZPBPQ9BS86 351 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 DESI2Q9BSY9 194 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 B3GNT4Q9C0J1 378 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 UBN1Q9NPG3 1134 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 BARX2Q9UMQ3 279 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 CHMP3Q9Y3E7 222 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 EIF1AYO14602 144 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 PLD2O14939 933 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SLC34A2O95436 690 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 SGPL1O95470 568 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 FDPSP14324 419 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 PPM1FP49593 454 aaPredicted RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 RESTQ13127 1097 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TAF3Q5VWG9 929 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 FAM205BPQ63HN1 556 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 FAM117BQ6P1L5 589 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TSEN2Q8NCE0 465 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 CRYGNQ8WXF5 182 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 CELF1Q92879 486 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 CCDC34Q96HJ3 373 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 STARD7Q9NQZ5 370 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 LMBRD1Q9NUN5 540 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 CPSF2Q9P2I0 782 aaKnown RBP4.37□□□□□ -1.71
MCF2-203ENST00000370576 FETUBQ9UGM5 382 aa4.37□□□□□ -1.71
MCF2-203ENST00000370576 TRIM64A6NGJ6 449 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 TRIM64BA6NI03 449 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 F8VZ95 297 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 GRIN3BO60391 1043 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 E2F6O75461 281 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PYGLP06737 847 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ALAS1P13196 640 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CCNCP24863 283 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 U2AF2P26368 475 aaKnown RBP eCLIP4.36□□□□□ -1.71
MCF2-203ENST00000370576 PHKA1P46020 1223 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ATP2B2Q01814 1243 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 SLC15A2Q16348 729 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MUM1Q2TAK8 710 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 LRRFIP1Q32MZ4 808 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 TRAPPC3LQ5T215 181 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 FAM186BQ8IYM0 893 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 TAB3Q8N5C8 712 aaPredicted RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 NAF1Q96HR8 494 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 TMEM74Q96NL1 305 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 LY9Q9HBG7 655 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MAN1C1Q9NR34 630 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 AAASQ9NRG9 546 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CHCHD3Q9NX63 227 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 LIMCH1Q9UPQ0 1083 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MROH7-TTC4A0A0A0MT08 1334 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PFASO15067 1338 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CNTNAP1P78357 1384 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ZNFX1Q9P2E3 1918 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 E7EWF7 191 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA12O60330 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 USO1O60763 962 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 ADAMTS2O95450 1211 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MT-ND3P03897 115 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CYP1A2P05177 515 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ATP6V1B1P15313 513 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 XBP1P17861 261 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 POLR2BP30876 1174 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 CLCN6P51797 869 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CCDC57Q2TAC2 916 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 C10orf76Q5T2E6 689 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms