RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 FXR1P51114 621 aaKnown RBP eCLIP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 CRYBB1P53674 252 aaPredicted RBP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 DEFB103AP81534 67 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 STK38Q15208 465 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 HYIQ5T013 277 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMCO2Q7Z6W1 182 aaPredicted RBP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 AK8Q96MA6 479 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 MTIF3Q9H2K0 278 aaKnown RBP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 BHMT2Q9H2M3 363 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 ATP6V0A4Q9HBG4 840 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 PADI3Q9ULW8 664 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 SLC4A7Q9Y6M7 1214 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 ARHGEF35A5YM69 484 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 CSDE1O75534 798 aaKnown RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 DGAT1O75907 488 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 DDIT3P35638 169 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 DNM1Q05193 864 aaKnown RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 IKBKEQ14164 716 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 MAEAQ7L5Y9 396 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 FAM228AQ86W67 206 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 LINC01599Q8WXQ3 324 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 EPSTI1Q96J88 318 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 GPRC5CQ9NQ84 441 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 SQORQ9Y6N5 450 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 MORC2Q9Y6X9 1032 aaPredicted RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 A0A087WZ62 844 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 ABHD14A-ACY1A0A1B0GW23 586 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 PAK2Q13177 524 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMEM119Q4V9L6 283 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 PADI6Q6TGC4 694 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 EXOC8Q8IYI6 725 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 PRPF31Q8WWY3 499 aaKnown RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 NLRP7Q8WX94 980 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 APBB2Q92870 758 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 NLRP4Q96MN2 994 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 SCLT1Q96NL6 688 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 FDXACB1Q9BRP7 624 aaPredicted RBP16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMX1Q9H3N1 280 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 ERVK-5Q9HDB9 667 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 COL4A3BPQ9Y5P4 624 aa16.78■□□□□ 0.28
SMPDL3A-201ENST00000368440 GAS2O43903 313 aaKnown RBP16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 RPS6KA5O75582 802 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 FGFR4P22455 802 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 UBA7P41226 1012 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 KARSQ15046 597 aaKnown RBP16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 USP38Q8NB14 1042 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 ASAP3Q8TDY4 903 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 TCP11Q8WWU5 503 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 PSPC1Q8WXF1 523 aaKnown RBP16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 POLD4Q9HCU8 107 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 TCHHQ07283 1943 aa16.77■□□□□ 0.27
SMPDL3A-201ENST00000368440 SPTLC2O15270 562 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 YEATS4O95619 227 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 EYA4O95677 639 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 DARSP14868 501 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 ATP2A2P16615 1042 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 EIF4BP23588 611 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 PBX2P40425 430 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 KCNJ6P48051 423 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 RABGGTBP53611 331 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 LAMTOR4Q0VGL1 99 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 NFX1Q12986 1120 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 KRI1Q8N9T8 703 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 SYMPKQ92797 1274 aaKnown RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 CDK5RAP3Q96JB5 506 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 POLR3FQ9H1D9 316 aaPredicted RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 CHMP5Q9NZZ3 219 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 ST3GAL5Q9UNP4 418 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 DNM3Q9UQ16 869 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 SZT2Q5T011 3432 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 MGEA5O60502 916 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 ARL2P36404 184 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 RTN4RL1Q86UN2 441 aaPredicted RBP16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 SLC9A7Q96T83 725 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 RUSC1Q9BVN2 902 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 NT5C3AQ9H0P0 336 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 IFT122Q9HBG6 1241 aa16.76■□□□□ 0.27
SMPDL3A-201ENST00000368440 SRGAP2CP0DJJ0 459 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 CYP11B2P19099 503 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 PLCG1P19174 1290 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 GLRA2P23416 452 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 SMAD3P84022 425 aaKnown RBP16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 ZNF410Q86VK4 478 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 PBX4Q9BYU1 374 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 CCSER1Q9C0I3 900 aa16.75■□□□□ 0.27
SMPDL3A-201ENST00000368440 EFCAB14O75071 495 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 PPP6R2O75170 966 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 CAPSQ13938 189 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 FAM102BQ5T8I3 360 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 HERC6Q8IVU3 1022 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 MYOCDQ8IZQ8 938 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 ZNF710Q8N1W2 664 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 RNF149Q8NC42 400 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 MCPH1Q8NEM0 835 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 BSNDQ8WZ55 320 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 CALML4Q96GE6 196 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms