RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TBC1D3KA0A087X1G2 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3FA6NER0 549 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 LRRC14BA6NHZ5 514 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3LB9A6J9 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 GAS2O43903 313 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 AKR1B10O60218 316 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3HP0C7X1 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SLC2A3P11169 496 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SFTPCP11686 197 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ID4P47928 161 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SLC11A2P49281 568 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SARSP49591 514 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ITIH3Q06033 890 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MTFR1Q15390 333 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MGAT5BQ3V5L5 792 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3GQ6DHY5 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3CQ6IPX1 549 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TBC1D3Q8IZP1 549 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZNF655Q8N720 491 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZNF366Q8N895 744 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 TMC2Q8TDI7 906 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 USP33Q8TEY7 942 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 UBLCP1Q8WVY7 318 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 RIT1Q92963 219 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 NAP1L5Q96NT1 182 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ZCCHC2Q9C0B9 1178 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 VTA1Q9NP79 307 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SAMD15Q9P1V8 674 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SERPINA10Q9UK55 444 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 HPS5Q9UPZ3 1129 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 C9J4A7 227 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MEIS1O00470 390 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 MAFGO15525 162 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 HBP1O60381 514 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 GH2P01242 217 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 JUPP14923 745 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CLK3P49761 638 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 LYSMD3Q7Z3D4 306 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 SRLQ86TD4 932 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 GPR135Q8IZ08 494 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 CAMKK1Q8N5S9 505 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 BBOF1Q8ND07 529 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 HCAR2Q8TDS4 363 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 DHX38Q92620 1227 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 ATP2A3Q93084 1043 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 ATP6V1E2Q96A05 226 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 IL12RB2Q99665 862 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 LARP6Q9BRS8 491 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 GTPBP2Q9BX10 602 aaKnown RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 PDGFDQ9GZP0 370 aaPredicted RBP4.41□□□□□ -1.7
USH2A-202ENST00000366942 HYOU1Q9Y4L1 999 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 INSL6Q9Y581 213 aa4.41□□□□□ -1.7
USH2A-202ENST00000366942 KLF18A0A0U1RQI7 1052 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 GDF11O95390 407 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ESRRBO95718 433 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 TP53P04637 393 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 AMD1P17707 334 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 BLKP51451 505 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 POLD3Q15054 466 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 LRCH2Q5VUJ6 765 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 IQSEC1Q6DN90 963 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 POTEAQ6S8J7 498 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 DEFB123Q8N688 67 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 FAR1Q8WVX9 515 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 HLA-CQ95604 372 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ASAH2Q9NR71 780 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 INTS10Q9NVR2 710 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 SPG21Q9NZD8 308 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ZNF70Q9UC06 446 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 BRPF3Q9ULD4 1205 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ASAP1Q9ULH1 1129 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 METP08581 1390 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ZFYVE9O95405 1425 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PRR5-ARHGAP8B1AHC4 643 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SPTLC1O15269 473 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PNPLA4P41247 253 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 VAMP7P51809 220 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PRPF4BQ13523 1007 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 FGL2Q14314 439 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 DCAF6Q58WW2 860 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 CCDC102BQ68D86 513 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PPP4R3CPQ6ZMV5 832 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 OR6B3Q8NGW1 331 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SPIRE2Q8WWL2 714 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 TGS1Q96RS0 853 aaKnown RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 OMDQ99983 421 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SCAND2PQ9GZW5 306 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 FEZ2Q9UHY8 353 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 A0A088AWK7 358 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SPECC1L-ADORA2AF8WAN1 911 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ADCY6O43306 1168 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NPTXRO95502 500 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 NFATC1O95644 943 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 ZNF10P21506 573 aaPredicted RBP4.4□□□□□ -1.7
USH2A-202ENST00000366942 MCM3P25205 808 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 GJC1P36383 396 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 SLC26A2P50443 739 aa4.4□□□□□ -1.7
USH2A-202ENST00000366942 PRELPP51888 382 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms