RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PLCB4Q15147 1175 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 SEC23AQ15436 765 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 PCNX4Q63HM2 1172 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 TMC5Q6UXY8 1006 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 SLC24A5Q71RS6 500 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 TMC7Q7Z402 723 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 TMEM173Q86WV6 379 aaPredicted RBP9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 SAMD3Q8N6K7 520 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 BCL7CQ8WUZ0 217 aaPredicted RBP9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 SEPT1Q8WYJ6 367 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 GLG1Q92896 1179 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 PPP1R16BQ96T49 567 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 HINFPQ9BQA5 517 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 RIOX1Q9H6W3 641 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 DBR1Q9UK59 544 aaKnown RBP9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 ST3GAL5Q9UNP4 418 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 DENND4AQ7Z401 1863 aa9.78□□□□□ -0.84
HMGB1P39-201ENST00000366304 FRYQ5TBA9 3013 aa9.77□□□□□ -0.84
HMGB1P39-201ENST00000366304 DCDC2BA2VCK2 349 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 NT5C1B-RDH14C9J2C7 533 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 STAM2O75886 525 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 PCP11498 1178 aaKnown RBP9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 MS4A1P11836 297 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 TGM1P22735 817 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 PRSS12P56730 875 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 HNRNPUQ00839 825 aaKnown RBP eCLIP9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 COL9A2Q14055 689 aaPredicted RBP9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 SMC1AQ14683 1233 aaKnown RBP9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 CLLU1OSQ5K130 101 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 SPECC1Q5M775 1068 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 MTHFD1LQ6UB35 978 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 FAM228AQ86W67 206 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 KIAA0319LQ8IZA0 1049 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 SLC39A11Q8N1S5 342 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 WNT2BQ93097 391 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZNF558Q96NG5 402 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 VN1R3Q9BXE9 311 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 SMARCAD1Q9H4L7 1026 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 TBC1D17Q9HA65 648 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 TMEM161AQ9NX61 479 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 FBXL21Q9UKT6 434 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 CA14Q9ULX7 337 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 GINS2Q9Y248 185 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 MYH6P13533 1939 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 LOXHD1Q8IVV2 1947 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZZEF1O43149 2961 aa9.77□□□□□ -0.85
HMGB1P39-201ENST00000366304 SMIM35A0A1B0GVV1 85 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 DENND3A2RUS2 1198 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 RRN3P2A6NIE6 340 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZBTB42B2RXF5 422 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 MEIS2O14770 477 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 RPS6KA5O75582 802 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 CXCL14O95715 111 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 ATAT1Q5SQI0 421 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 CYB5R4Q7L1T6 521 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 GPR149Q86SP6 731 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 IQCA1Q86XH1 822 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 ST13P5Q8NFI4 369 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 PIBF1Q8WXW3 757 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 EVI5LQ96CN4 794 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 TMEM117Q9H0C3 514 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 RNF41Q9H4P4 317 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 ATP6V0A4Q9HBG4 840 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 SPG21Q9NZD8 308 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 PUF60Q9UHX1 559 aaKnown RBP9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 PCDHB15Q9Y5E8 787 aa9.76□□□□□ -0.85
HMGB1P39-201ENST00000366304 GRM4Q14833 912 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 WTAPQ15007 396 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 KIZQ2M2Z5 673 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 XRRA1Q6P2D8 792 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 PACS2Q86VP3 889 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 C1orf210Q8IVY1 113 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 GPRASP2Q96D09 838 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 FOXQ1Q9C009 403 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZBP1Q9H171 429 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 PARD6AQ9NPB6 346 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 NPDC1Q9NQX5 325 aaPredicted RBP9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 C1orf112Q9NSG2 853 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 WNT16Q9UBV4 365 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 UBIAD1Q9Y5Z9 338 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 FANCMQ8IYD8 2048 aa9.75□□□□□ -0.85
HMGB1P39-201ENST00000366304 PKD1L2Q7Z442 2459 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 SPEGQ15772 3267 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 PNMA6FA0A0J9YX94 578 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 M0QZ92 97 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 ZNF213O14771 459 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 B4GALT3O60512 393 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 GPR32O75388 356 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 ADRB1P08588 477 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 KLRC1P26715 233 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 METAP2P50579 478 aaKnown RBP eCLIP9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 KRT17Q04695 432 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 TBC1D8BQ0IIM8 1120 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 CCDC178Q5BJE1 867 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 NME8Q8N427 588 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 SLC44A3Q8N4M1 653 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 GPR152Q8TDT2 470 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 MYADMQ96S97 322 aa9.74□□□□□ -0.85
HMGB1P39-201ENST00000366304 OSMRQ99650 979 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms