RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SEL1LQ9UBV2 794 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 TBK1Q9UHD2 729 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 MAGED2Q9UNF1 606 aaPredicted RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 DENND3A2RUS2 1198 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 SYCE1LA8MT33 242 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 KRT7P08729 469 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 HDAC4P56524 1084 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CAPRIN1Q14444 709 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 RPAINQ86UA6 219 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 TEKT4Q8WW24 435 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 PAWRQ96IZ0 340 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 FAM20AQ96MK3 541 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 MTA3Q9BTC8 594 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 PUS3Q9BZE2 481 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 SLITRK6Q9H5Y7 841 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 CDV3Q9UKY7 258 aaKnown RBP6.9□□□□□ -1.3
UPF2-201ENST00000356352 SUFUQ9UMX1 484 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 UBE4BO95155 1302 aa6.9□□□□□ -1.3
UPF2-201ENST00000356352 ANO9A1A5B4 782 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 E5RI56 91 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 CHUKO15111 745 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 FOXP2O15409 715 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 CTTNQ14247 550 aaKnown RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 FLOT2Q14254 428 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 MXD4Q14582 209 aaPredicted RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 MORF4L2Q15014 288 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 USP17L2Q6R6M4 530 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 CLEC4GQ6UXB4 293 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 KRT27Q7Z3Y8 459 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 APOBEC3FQ8IUX4 373 aaKnown RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 PIP4K2CQ8TBX8 421 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 EXT2Q93063 718 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 EPAS1Q99814 870 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 EML4Q9HC35 981 aaKnown RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 OLFML3Q9NRN5 406 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 FNDC3AQ9Y2H6 1198 aaKnown RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 IGSF1Q8N6C5 1336 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 HEG1Q9ULI3 1381 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 GOLGA8JA6NMD2 632 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 ZBTB5O15062 677 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 MFAP3LO75121 409 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 AARSP49588 968 aaKnown RBP eCLIP6.9□□□□□ -1.317e-6■□□□□ 11.2
UPF2-201ENST00000356352 PEX3P56589 373 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 MECOMQ03112 1051 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 WASHC5Q12768 1159 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 TTLL4Q14679 1199 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 TRIP13Q15645 432 aaPredicted RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 UBE2SQ16763 222 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 CDO1Q16878 200 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 EFHC2Q5JST6 749 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 TTLL6Q8N841 843 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 XXYLT1Q8NBI6 393 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 PITPNM3Q9BZ71 974 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 FTOQ9C0B1 505 aaKnown RBP eCLIP6.9□□□□□ -1.312e-8■■□□□ 13.3
UPF2-201ENST00000356352 NGRNQ9NPE2 291 aaKnown RBP6.9□□□□□ -1.31
UPF2-201ENST00000356352 DNAJC12Q9UKB3 198 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 PCDHB8Q9UN66 801 aa6.9□□□□□ -1.31
UPF2-201ENST00000356352 RFX7Q2KHR2 1363 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NPHP4O75161 1426 aaPredicted RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 PVALEFA0A1B0GWK0 134 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 SOWAHDA6NJG2 315 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 KIAA0391O15091 583 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 FGGP02679 453 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 EIF2AK2P19525 551 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 KCNA4P22459 653 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 SDC4P31431 198 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 RESP18Q5W5W9 173 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NLRP10Q86W26 655 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 RASSF3Q86WH2 238 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ACRBPQ8NEB7 543 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZNF302Q9NR11 478 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 CNOT8Q9UFF9 292 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 PCDHA6Q9UN73 950 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ARHGAP26Q9UNA1 814 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 PCDHA8Q9Y5H6 950 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 PSMD3O43242 534 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 TADA3O75528 432 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 RALAP11233 206 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 GUCY2CP25092 1073 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 HADHAP40939 763 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 SLCO1A2P46721 670 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 CDC42EP1Q00587 391 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ADCY1Q08828 1119 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 EFTUD2Q15029 972 aaKnown RBP eCLIP6.89□□□□□ -1.312e-8■■■■□ 24.4
UPF2-201ENST00000356352 GRAMD1BQ3KR37 738 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZNF568Q3ZCX4 644 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZC3H12BQ5HYM0 836 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 KCNV1Q6PIU1 500 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 C11orf57Q6ZUT1 292 aaPredicted RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 SMYD4Q8IYR2 804 aaPredicted RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 SLC26A7Q8TE54 656 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NSUN6Q8TEA1 469 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 RUBCNQ92622 972 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 RAD54LQ92698 747 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZNF560Q96MR9 790 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ING2Q9H160 280 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 SP110Q9HB58 689 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 GTSE1Q9NYZ3 720 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NOP53Q9NZM5 478 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 MOSPD1Q9UJG1 213 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms