RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 GPC3P51654 580 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 COASYQ13057 564 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CSPP1Q1MSJ5 1256 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 THNSL1Q8IYQ7 743 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 SMRP1Q8NCR6 262 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 MICAL1Q8TDZ2 1067 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 ZNF274Q96GC6 653 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 LARP6Q9BRS8 491 aaKnown RBP16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TLE6Q9H808 572 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 BARX2Q9UMQ3 279 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CYP46A1Q9Y6A2 500 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TECTAO75443 2155 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 MUC6Q6W4X9 2439 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CYP3A7-CYP3A51PA0A087WV96 503 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TDP2O95551 362 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 ZSCAN20P17040 1043 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 LAG3P18627 525 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CYP3A7P24462 503 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 ERVFC1P60507 584 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TBC1D8BQ0IIM8 1120 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TARBP2Q15633 366 aaKnown RBP16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 NPY5RQ15761 445 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 B3GNT9Q6UX72 402 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 LRRC55Q6ZSA7 311 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 MIER3Q7Z3K6 550 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 ECHDC2Q86YB7 292 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 BLIDQ8IZY5 108 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 DAGLBQ8NCG7 672 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 RDM1Q8NG50 284 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 AIFM3Q96NN9 605 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CASD1Q96PB1 797 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 TM6SF1Q9BZW5 370 aa16.3■□□□□ 0.2
PRPF40A-201ENST00000354363 CPLX1O14810 134 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 FSCN2O14926 492 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 PER2O15055 1255 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 HOXA2O43364 376 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 DARSP14868 501 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 MBOAT7Q96N66 472 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 NIFKQ9BYG3 293 aaKnown RBP16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 ZNF318Q5VUA4 2279 aa16.29■□□□□ 0.2
PRPF40A-201ENST00000354363 TRIOO75962 3097 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 STBD1O95210 358 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 FGFR4P22455 802 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 STK3Q13188 491 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 DRP2Q13474 957 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 DUSP6Q16828 381 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 MTERF2Q49AM1 385 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 PDE12Q6L8Q7 609 aaKnown RBP16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 RNF135Q8IUD6 432 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 VN1R2Q8NFZ6 395 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 ETNPPLQ8TBG4 499 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 MRPS27Q92552 414 aaKnown RBP16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 SCLT1Q96NL6 688 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 CEP89Q96ST8 783 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 SEPT9Q9UHD8 586 aaPredicted RBP16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 MUTYHQ9UIF7 546 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 LZTS1Q9Y250 596 aa16.28■□□□□ 0.2
PRPF40A-201ENST00000354363 TMEM150BA6NC51 233 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 RBM10P98175 930 aaKnown RBP16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 PLCB3Q01970 1234 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 XKR3Q5GH77 459 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 HERC4Q5GLZ8 1057 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 CLLU1OSQ5K130 101 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 GALNT17Q6IS24 598 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 KCNT2Q6UVM3 1135 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 MOXD1Q6UVY6 613 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 FAM177A1Q8N128 213 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 LRRC43Q8N309 656 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 NLRP7Q8WX94 980 aa16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 CDCA3Q99618 268 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 USP15Q9Y4E8 981 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-201ENST00000354363 IGKV6-21A0A0C4DH24 114 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 A0A0U1RQF3 1178 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 CSDE1O75534 798 aaKnown RBP16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 HOXD11P31277 338 aaPredicted RBP16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 NONOQ15233 471 aaKnown RBP eCLIP16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 PLPP4Q5VZY2 271 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 CPLX2Q6PUV4 134 aaKnown RBP16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 ZNF598Q86UK7 904 aaKnown RBP16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 ABI1Q8IZP0 508 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 RNF169Q8NCN4 708 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 ZNF558Q96NG5 402 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 SH2D3AQ9BRG2 576 aa16.27■□□□□ 0.19
PRPF40A-201ENST00000354363 ARID2Q68CP9 1835 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 FSD2A1L4K1 749 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 EOMESO95936 686 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 ATF7P17544 494 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 PBX3P40426 434 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 INF2Q27J81 1249 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 GCOM2Q9BZD3 368 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 PDRG1Q9NUG6 133 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 DDX25Q9UHL0 483 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 PUF60Q9UHX1 559 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 MYO10Q9HD67 2058 aa16.26■□□□□ 0.19
PRPF40A-201ENST00000354363 LOC730098B7Z3J9 87 aa16.25■□□□□ 0.19
PRPF40A-201ENST00000354363 SLC37A4O43826 429 aa16.25■□□□□ 0.19
PRPF40A-201ENST00000354363 PPM1AP35813 382 aa16.25■□□□□ 0.19
PRPF40A-201ENST00000354363 CDC42EP1Q00587 391 aa16.25■□□□□ 0.19
PRPF40A-201ENST00000354363 KCNC3Q14003 757 aa16.25■□□□□ 0.19
PRPF40A-201ENST00000354363 KRT25Q7Z3Z0 450 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms