RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 FAM84AQ96KN4 292 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 OSMRQ99650 979 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 TMEM106CQ9BVX2 250 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 ATP6V0A4Q9HBG4 840 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 PARVGQ9HBI0 331 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 SUCLA2Q9P2R7 463 aaPredicted RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 ATP11BQ9Y2G3 1177 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 MAFBQ9Y5Q3 323 aaPredicted RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 FAM170AA1A519 330 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 A6NJR5 290 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 CD44P16070 742 aaKnown RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 PXYLP1Q8TE99 480 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 PAWRQ96IZ0 340 aaKnown RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 PRCPP42785 496 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 NFRKBQ6P4R8 1299 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 RUFY4Q6ZNE9 571 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 ZBTB33Q86T24 672 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 MSL3Q8N5Y2 521 aaKnown RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 DEPTORQ8TB45 409 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 ASAP3Q8TDY4 903 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 KMT5AQ9NQR1 393 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 XPNPEP1Q9NQW7 623 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 UNC80Q8N2C7 3258 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 TRIOBPQ9H2D6 2365 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 A0A087WZ62 844 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 GOLGA8IPA6NC78 632 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 GOLGA8JA6NMD2 632 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 EN2P19622 333 aaPredicted RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 THPOP40225 353 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 CYP2J2P51589 502 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 DMP1Q13316 513 aaPredicted RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 COL13A1Q5TAT6 717 aaPredicted RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 FBXO46Q6PJ61 603 aaPredicted RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 C1orf186Q6ZWK4 172 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 DAW1Q8N136 415 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 DNAJC19Q96DA6 116 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 FDXACB1Q9BRP7 624 aaPredicted RBP10.17□□□□□ -0.78
USP4-202ENST00000351842 APOL6Q9BWW8 343 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 IGSF9BQ9UPX0 1349 aa10.17□□□□□ -0.78
USP4-202ENST00000351842 DENND3A2RUS2 1198 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 HBP1O60381 514 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 ADAMTS4O75173 837 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 MDM2Q00987 491 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 ITGA7Q13683 1181 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 LHX8Q68G74 356 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 GDF6Q6KF10 455 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 BBXQ8WY36 941 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 IFT74Q96LB3 600 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 CFHR5Q9BXR6 569 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 RBSNQ9H1K0 784 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 GOLGA6L19H0YKK7 550 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 NKRFO15226 690 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP4-202ENST00000351842 CTAGE5O15320 804 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 DKC1O60832 514 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP4-202ENST00000351842 CDK11BP21127 795 aaKnown RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 DNM2P50570 870 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 CDR1P51861 262 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 MKRN4PQ13434 485 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 STX1AQ16623 288 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 CEP135Q66GS9 1140 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 KIAA0895Q8NCT3 520 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 MAP7D2Q96T17 732 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 MTG1Q9BT17 334 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 CDHR5Q9HBB8 845 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 LARSQ9P2J5 1176 aaKnown RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 COL4A3BPQ9Y5P4 624 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 ZEB2O60315 1214 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 DGAT1O75907 488 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 PMS1P54277 932 aaKnown RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 CCL23P55773 120 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 PTGISQ16647 500 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 LRSAM1Q6UWE0 723 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP4-202ENST00000351842 NEK9Q8TD19 979 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 PSPC1Q8WXF1 523 aaKnown RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 WNT8BQ93098 351 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 GRPEL1Q9HAV7 217 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 RRAGDQ9NQL2 400 aaPredicted RBP10.16□□□□□ -0.78
USP4-202ENST00000351842 ANO10Q9NW15 660 aa10.16□□□□□ -0.78
USP4-202ENST00000351842 A0A1W2PQ45 241 aaPredicted RBP10.15□□□□□ -0.78
USP4-202ENST00000351842 A0A1W2PQY0 241 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 RBM47A0AV96 593 aaKnown RBP10.15□□□□□ -0.78
USP4-202ENST00000351842 C17orf102A2RUQ5 167 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 HNRNPDLO14979 420 aaKnown RBP10.15□□□□□ -0.78
USP4-202ENST00000351842 ATG7O95352 703 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 F2P00734 622 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 GNRH1P01148 92 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 NPTX2P47972 431 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 GJA9P57773 515 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 NELFBQ8WX92 580 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 TIGD1Q96MW7 591 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 PYM1Q9BRP8 204 aaKnown RBP10.15□□□□□ -0.78
USP4-202ENST00000351842 ADGRA3Q8IWK6 1321 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 TTLL13PA6NNM8 815 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 ZBTB42B2RXF5 422 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 B4GALT5O43286 388 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 KLRC4O43908 158 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 CSPG5O95196 566 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 CLCN1P35523 988 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 LAMTOR4Q0VGL1 99 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms