RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 LINC00116Q8NCU8 138 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 PPFIBP2Q8ND30 876 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 SPATA20Q8TB22 786 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 ELMO3Q96BJ8 720 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 SEC16BQ96JE7 1060 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 EIF2AK1Q9BQI3 630 aaKnown RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 MAK16Q9BXY0 300 aaKnown RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 H0YIN7 160 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 CA4P22748 312 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 AMPD2Q01433 879 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 ZNF543Q08ER8 600 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 TRPC3Q13507 836 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 SLC29A2Q14542 456 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 GRIK5Q16478 980 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 C2CD6Q53TS8 623 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 LMBRD2Q68DH5 695 aaPredicted RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 NLRX1Q86UT6 975 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 PALM2Q8IXS6 379 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 SCYL3Q8IZE3 742 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 PAF1Q8N7H5 531 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 LRRC8CQ8TDW0 803 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 CNOT10Q9H9A5 744 aaKnown RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 EMSYQ7Z589 1322 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 A0A1W2PQJ5 194 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 LRRIQ4A6NIV6 560 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 PBX1P40424 430 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 LIG4P49917 911 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 EIF3BP55884 814 aaKnown RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 DLGAP5Q15398 846 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 C6orf118Q5T5N4 469 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 PARP9Q8IXQ6 854 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 RNF25Q96BH1 459 aaPredicted RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 RILPQ96NA2 401 aa13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 CNOT8Q9UFF9 292 aaKnown RBP13.39□□□□□ -0.27
SNRNP48-201ENST00000342415 GRID2IPA4D2P6 1211 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 SLC16A4O15374 487 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 BRAFP15056 766 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 GAP43P17677 238 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 CD58P19256 250 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 GBP1P32455 592 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 PSMC6P62333 389 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 MUM1Q2TAK8 710 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 KLRC4O43908 158 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 MFAP3P55082 362 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 BFSP1Q12934 665 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 ZNF571Q7Z3V5 609 aaPredicted RBP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 ZNF507Q8TCN5 953 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 JDP2Q8WYK2 163 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 PI4KBQ9UBF8 816 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 DAGLAQ9Y4D2 1042 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 RIC1Q4ADV7 1423 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 EXOC1LA0A1B0GW35 172 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 hCG_1984214I3L0E3 225 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 SGK1O00141 431 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 BAG2O95816 211 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 ATP2A2P16615 1042 aaKnown RBP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 HSPA1LP34931 641 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 STAT2P52630 851 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 ZNF713Q8N859 430 aaPredicted RBP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 RFFLQ8WZ73 363 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 PITPNM3Q9BZ71 974 aa13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 INTS2Q9H0H0 1204 aaKnown RBP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.38□□□□□ -0.27
SNRNP48-201ENST00000342415 TCP11X1B4DZS4 312 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 CYP26A1O43174 497 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 SPAG7O75391 227 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 MED24O75448 989 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 BBOX1O75936 387 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 RWDD2BP57060 319 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 CASC4Q6P4E1 433 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 CATSPER3Q86XQ3 398 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 LMNTD2Q8IXW0 634 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 C9orf72Q96LT7 481 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 EDEM3Q9BZQ6 932 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 MRPL11Q9Y3B7 192 aaKnown RBP13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 RAD17O75943 681 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 FAM107AO95990 144 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 CYP11B2P19099 503 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 SOX5P35711 763 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 USP11P51784 963 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 GPC5P78333 572 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 FUT2Q10981 343 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 TTMPQ5BVD1 217 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 BTBD6Q96KE9 485 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 KLHL11Q9NVR0 708 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 NWD1Q149M9 1564 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 ZNF263O14978 683 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 KIAA1755Q5JYT7 1200 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 SCYL2Q6P3W7 929 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 TRIM59Q8IWR1 403 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 PNMA5Q96PV4 448 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 NUP85Q9BW27 656 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 SLC40A1Q9NP59 571 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 BLOC1S4Q9NUP1 217 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 RAB20Q9NX57 234 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 PCDHB4Q9Y5E5 795 aa13.37□□□□□ -0.27
SNRNP48-201ENST00000342415 C3P01024 1663 aa13.36□□□□□ -0.27
SNRNP48-201ENST00000342415 RASA4BC9J798 803 aa13.36□□□□□ -0.27
SNRNP48-201ENST00000342415 RASA4O43374 803 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms