RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FAM163AQ96GL9 167 aaPredicted RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 USP40Q9NVE5 1235 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 PCDHB13Q9Y5F0 798 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 CCT8L1PA6NM43 557 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 MPHOSPH10O00566 681 aaKnown RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 PPFIA2O75334 1257 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 EZRP15311 586 aaKnown RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 SLCO1A2P46721 670 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 IFNAR2P48551 515 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 DR1Q01658 176 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 SLC35G2Q8TBE7 412 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 TBC1D22AQ8WUA7 517 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 ZNF219Q9P2Y4 722 aaPredicted RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 KDM3AQ9Y4C1 1321 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 RSPH10B2B2RC85 870 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 RSPH10BP0C881 870 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 SMARCA1P28370 1054 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 NFIAQ12857 509 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 ZC3H3Q8IXZ2 948 aaKnown RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 LRRC34Q8IZ02 419 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 DHX36Q9H2U1 1008 aaKnown RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.27■■□□□ 1.489e-8■□□□□ 9.1
TRIM28-202ENST00000341753 SWAP70Q9UH65 585 aa24.27■■□□□ 1.48
TRIM28-202ENST00000341753 TRPC5Q9UL62 973 aaPredicted RBP24.27■■□□□ 1.48
TRIM28-202ENST00000341753 ONECUT3O60422 494 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 VPS36Q86VN1 386 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 TEX2Q8IWB9 1127 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 SEC14L1Q92503 715 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 RNF25Q96BH1 459 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 ELAC2Q9BQ52 826 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 KDM4CQ9H3R0 1056 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 USP17L10C9JJH3 530 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 PRKCIP41743 596 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 SLC12A3P55017 1021 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 KNOP1Q1ED39 458 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 FRMD5Q7Z6J6 570 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 PNMA8AQ86V59 439 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 CUL5Q93034 780 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 ZNF317Q96PQ6 595 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 CRAMP1Q96RY5 1269 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 ZC3H12CQ9C0D7 883 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 SEPT11Q9NVA2 429 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 TMOD4Q9NZQ9 345 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 NENFQ9UMX5 172 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 PPIP5K2O43314 1243 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 CLTAP09496 248 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 NT5C2P49902 561 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 KCTD1Q719H9 257 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 ARMC9Q7Z3E5 817 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 SYCE1Q8N0S2 351 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 PRMT1Q99873 361 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 REEP2Q9BRK0 252 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 TXLNGYQ9BZA5 131 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 CCDC113Q9H0I3 377 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 PSTPIP2Q9H939 334 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 CNOT10Q9H9A5 744 aaKnown RBP24.26■■□□□ 1.47
TRIM28-202ENST00000341753 NOD2Q9HC29 1040 aa24.26■■□□□ 1.47
TRIM28-202ENST00000341753 EVI5O60447 810 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 ATP6V1G2O95670 118 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 KRT13P13646 458 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 PMS2P54278 862 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 TBC1D1Q86TI0 1168 aaPredicted RBP24.25■■□□□ 1.47
TRIM28-202ENST00000341753 RPAINQ86UA6 219 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 SLF2Q8IX21 1173 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 FBXO25Q8TCJ0 367 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 ADAM7Q9H2U9 754 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 DAAM1Q9Y4D1 1078 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 DDX3YO15523 660 aaKnown RBP24.25■■□□□ 1.47
TRIM28-202ENST00000341753 MGRN1O60291 552 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 DNAJC8O75937 253 aaPredicted RBP24.25■■□□□ 1.47
TRIM28-202ENST00000341753 CLK2P49760 499 aaKnown RBP24.25■■□□□ 1.47
TRIM28-202ENST00000341753 JAM2P57087 298 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 GABPAQ06546 454 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 TCP10Q12799 353 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 GIT2Q14161 759 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 CCDC38Q502W7 563 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 HYIQ5T013 277 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 CCDC50Q8IVM0 306 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 ARHGEF26Q96DR7 871 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 DBNDD1Q9H9R9 158 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 ZDHHC18Q9NUE0 388 aa24.25■■□□□ 1.47
TRIM28-202ENST00000341753 PNMA6FA0A0J9YX94 578 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 SFI1A8K8P3 1242 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 VIMP08670 466 aaKnown RBP24.24■■□□□ 1.47
TRIM28-202ENST00000341753 CLNS1AP54105 237 aaKnown RBP24.24■■□□□ 1.47
TRIM28-202ENST00000341753 SLC29A2Q14542 456 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 HOOK3Q86VS8 718 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 ATXN2LQ8WWM7 1075 aaKnown RBP24.24■■□□□ 1.47
TRIM28-202ENST00000341753 SLC35C1Q96A29 364 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 hCG_1984214I3L0E3 225 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 NR3C1P04150 777 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 ASPRV1Q53RT3 343 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 DENND2CQ68D51 928 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 PPP4R3CPQ6ZMV5 832 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 SP8Q8IXZ3 490 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 ZNF713Q8N859 430 aaPredicted RBP24.24■■□□□ 1.47
TRIM28-202ENST00000341753 NEK9Q8TD19 979 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 MIEF2Q96C03 454 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 ERP44Q9BS26 406 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 RAB17Q9H0T7 212 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms