RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 C4BP0C0L5 1744 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TTC21AQ8NDW8 1320 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 C2orf71A6NGG8 1288 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 HSF2BPO75031 334 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GNA14O95837 355 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SLC30A9Q6PML9 568 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 N4BP2L2Q92802 583 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 POP1Q99575 1024 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CD2APQ9Y5K6 639 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MGAMO43451 1857 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 AP3B1O00203 1094 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TADA3O75528 432 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 FMNL1O95466 1100 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 DNM2P50570 870 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 COQ7Q99807 217 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SAMD15Q9P1V8 674 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 LRP2BPQ9P2M1 347 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 FNDC3AQ9Y2H6 1198 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 URB1O60287 2271 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA6CA6NDK9 693 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 H7C1D1 291 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MAN1A2O60476 641 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA6DP0CG33 693 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 FAM81BQ96LP2 452 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RASSF10A6NK89 507 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGEF9O43307 516 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PAK2Q13177 524 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 WTAPQ15007 396 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 C2CD6Q53TS8 623 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RBM8AQ9Y5S9 174 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MICU3Q86XE3 530 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GLYCTKQ8IVS8 523 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GLT8D2Q9H1C3 349 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SORCS3Q9UPU3 1222 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TANC2Q9HCD6 1990 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC85CA6NKD9 419 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PDE6CP51160 858 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CCNHP51946 323 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF713Q8N859 430 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 AFAP1L1Q8TED9 768 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MAK16Q9BXY0 300 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 FHOD1Q9Y613 1164 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC188H7C350 402 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RTN3O95197 1032 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 NOP56O00567 594 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 AHCYL1O43865 530 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 NDUFA8P51970 172 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 AMPD3Q01432 767 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MTA1Q13330 715 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 KRR1Q13601 381 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CAPN10Q9HC96 672 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RSPH10B2B2RC85 870 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RSPH10BP0C881 870 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 VAMP1P23763 118 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 OXER1Q8TDS5 423 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GLMNQ92990 594 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GPR108Q9NPR9 543 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 EDC4Q6P2E9 1401 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 H3BNX3 289 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PENKP01210 267 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 S100A1P23297 94 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CUL3Q13618 768 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM50Q86XT4 487 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ZSWIM6Q9HCJ5 1215 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SQORQ9Y6N5 450 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ARID1AO14497 2285 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 IRF5Q13568 498 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PRCCQ92733 491 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 DNAJC12Q9UKB3 198 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PNMA2Q9UL42 364 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PHLDB3Q6NSJ2 640 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 HEATR3Q7Z4Q2 680 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ATP2A3Q93084 1043 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 OTULINQ96BN8 352 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RAB17Q9H0T7 212 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 DCTN4Q9UJW0 460 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 POGZQ7Z3K3 1410 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 H3BQF6 201 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 NMD3Q96D46 503 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM55Q9BYV6 548 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ITIH6Q6UXX5 1313 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 DDX58O95786 925 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 NEK2P51955 445 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 DYNLL1P63167 89 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 XIAPP98170 497 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ESYT1Q9BSJ8 1104 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF701M0R085 212 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC166P0CW27 439 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GJA8P48165 433 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ITIH4Q14624 930 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 WLSQ5T9L3 541 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 RNF217Q8TC41 542 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PCDH10Q9P2E7 1040 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 IMPDH2P12268 514 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GUCY2DQ02846 1103 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SPA17Q15506 151 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SGO1Q5FBB7 561 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CDC37L1Q7L3B6 337 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 BTBD6Q96KE9 485 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TTC1Q99614 292 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms