RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GOLGA8DPQ0D2H9 430 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 SREBF2Q12772 1141 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 MTERF2Q49AM1 385 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 CCDC40Q4G0X9 1142 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PLPPR4Q7Z2D5 763 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 FRMD5Q7Z6J6 570 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM139Q8IV31 216 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 KSR1Q8IVT5 923 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 MSL3Q8N5Y2 521 aaKnown RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 GOLGA5Q8TBA6 731 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 COPS5Q92905 334 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 FAM167AQ96KS9 214 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 SPATA33Q96N06 139 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PANX2Q96RD6 677 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM206Q9H813 350 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 NRBP2Q9NSY0 501 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 DMAC2Q9NW81 257 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PPME1Q9Y570 386 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 EMSYQ7Z589 1322 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 NOP56O00567 594 aaKnown RBP17■□□□□ 0.31
LIMS1-202ENST00000338045 SLC16A3O15427 465 aaKnown RBP17■□□□□ 0.31
LIMS1-202ENST00000338045 NRDCO43847 1150 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 MFAP3LO75121 409 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 NPTX2P47972 431 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 FXR1P51114 621 aaKnown RBP eCLIP17■□□□□ 0.31
LIMS1-202ENST00000338045 DMP1Q13316 513 aaPredicted RBP17■□□□□ 0.31
LIMS1-202ENST00000338045 MYBPC2Q14324 1141 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 NOLC1Q14978 699 aaKnown RBP eCLIP17■□□□□ 0.31
LIMS1-202ENST00000338045 FKBP15Q5T1M5 1219 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM63BQ5T3F8 832 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 HS2ST1Q7LGA3 356 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 HAUS6Q7Z4H7 955 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 SLC9A9Q8IVB4 645 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 NPLOC4Q8TAT6 608 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 AZI2Q9H6S1 392 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 AGPAT3Q9NRZ7 376 aa17■□□□□ 0.31
LIMS1-202ENST00000338045 AKAP3O75969 853 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 CASP14P31944 242 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TM4SF4P48230 202 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 ARHGAP1Q07960 439 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 EMC2Q15006 297 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 CNGA4Q8IV77 575 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 C17orf53Q8N3J3 647 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 RETREG2Q8NC44 543 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM161BQ8NDZ6 487 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 BSNDQ8WZ55 320 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 KCNN1Q92952 543 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 EMID1Q96A84 441 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 HVCN1Q96D96 273 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 CCDC51Q96ER9 411 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 ACCSQ96QU6 501 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TINF2Q9BSI4 451 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 MKNK1Q9BUB5 465 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TTYH3Q9C0H2 523 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 IKZF4Q9H2S9 585 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 KCND1Q9NSA2 647 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 SLC5A4Q9NY91 659 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 CGNQ9P2M7 1197 aaKnown RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 FAM184BQ9ULE4 1060 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM88BA6NKF7 163 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 CLIC2O15247 247 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 TPM1P09493 284 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 HOXC6P09630 235 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 FECHP22830 423 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 RFC5P40937 340 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 SLC26A2P50443 739 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 SMTNP53814 917 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 POLGP54098 1239 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 MAP2K5Q13163 448 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 LAMC2Q13753 1193 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 SYCP1Q15431 976 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 FIGNQ5HY92 759 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 C12orf56Q8IXR9 622 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 BBXQ8WY36 941 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 NUP58Q9BVL2 599 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 ABHD16BQ9H3Z7 469 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 ZFYVE28Q9HCC9 887 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 METTL14Q9HCE5 456 aaKnown RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 ABT1Q9ULW3 272 aaKnown RBP16.99■□□□□ 0.31
LIMS1-202ENST00000338045 SIK3Q9Y2K2 1263 aa16.99■□□□□ 0.31
LIMS1-202ENST00000338045 RASSF10A6NK89 507 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 SLC16A4O15374 487 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 STX10O60499 249 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 SOX10P56693 466 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 SNRPFP62306 86 aaKnown RBP16.98■□□□□ 0.31
LIMS1-202ENST00000338045 PPP2R3AQ06190 1150 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 IRF5Q13568 498 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 USP6NLQ92738 828 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 BORCS6Q96GS4 357 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 BAG1Q99933 345 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-202ENST00000338045 ARMCX3Q9UH62 379 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-202ENST00000338045 KCNG1Q9UIX4 513 aa16.98■□□□□ 0.31
LIMS1-202ENST00000338045 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.98■□□□□ 0.31
LIMS1-202ENST00000338045 RNF225M0QZC1 329 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-202ENST00000338045 GH1P01241 217 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 EPB41P11171 864 aaKnown RBP16.97■□□□□ 0.31
LIMS1-202ENST00000338045 ADCYAP1R1P41586 468 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 CASP4P49662 377 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 SYCP3Q8IZU3 236 aa16.97■□□□□ 0.31
LIMS1-202ENST00000338045 ATP8B4Q8TF62 1192 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms