RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 KCNK18Q7Z418 384 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 TCP11Q8WWU5 503 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 NLRP7Q8WX94 980 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 EPSTI1Q96J88 318 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 CHAMP1Q96JM3 812 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 ADAMTS10Q9H324 1103 aa17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 CXXC1Q9P0U4 656 aaPredicted RBP17.69■□□□□ 0.42
CCDC28A-201ENST00000332797 SLC26A4O43511 780 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 PPP6R2O75170 966 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 EYA4O95677 639 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 CD52P31358 61 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 KARSQ15046 597 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 TMEM119Q4V9L6 283 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 USP49Q70CQ1 688 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 MAEAQ7L5Y9 396 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 KSR1Q8IVT5 923 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 KCNG4Q8TDN1 519 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 TMEM40Q8WWA1 233 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 PSPC1Q8WXF1 523 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 SYMPKQ92797 1274 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 AGO3Q9H9G7 860 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 COL4A3BPQ9Y5P4 624 aa17.68■□□□□ 0.42
CCDC28A-201ENST00000332797 LOXHD1Q8IVV2 1947 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 BAIAP3O94812 1187 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 TXLNAP40222 546 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 KRT85P78386 507 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 PAK2Q13177 524 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 IKBKEQ14164 716 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 HABP4Q5JVS0 413 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 RASIP1Q5U651 963 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 ZNF710Q8N1W2 664 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 USP38Q8NB14 1042 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 PRPF31Q8WWY3 499 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 APBB2Q92870 758 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 NLRP4Q96MN2 994 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 POLR3FQ9H1D9 316 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 NOC2LQ9Y3T9 749 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 SQORQ9Y6N5 450 aa17.67■□□□□ 0.42
CCDC28A-201ENST00000332797 A0A087WZ62 844 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 RPS6KA5O75582 802 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 SSBP05455 408 aaKnown RBP eCLIP17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 PLCG1P19174 1290 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 ME1P48163 572 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 CDC42EP1Q00587 391 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 LAMTOR4Q0VGL1 99 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 FAM102BQ5T8I3 360 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 MCPH1Q8NEM0 835 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 FDXACB1Q9BRP7 624 aaPredicted RBP17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 CCSER1Q9C0I3 900 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 GPRC5CQ9NQ84 441 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 PADI3Q9ULW8 664 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 SLC4A7Q9Y6M7 1214 aa17.66■□□□□ 0.42
CCDC28A-201ENST00000332797 TRIOBPQ9H2D6 2365 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 ABHD14A-ACY1A0A1B0GW23 586 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 CUTAO60888 179 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 CYP11B2P19099 503 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 KCNJ6P48051 423 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 WDR5P61964 334 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 ZNF410Q86VK4 478 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 KCTD17Q8N5Z5 321 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 ASAP3Q8TDY4 903 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 GCOM2Q9BZD3 368 aaPredicted RBP17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 CCDC39Q9UFE4 941 aa17.65■□□□□ 0.42
CCDC28A-201ENST00000332797 EFCAB14O75071 495 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 PLA2G4BP0C869 781 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 SRGAP2CP0DJJ0 459 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 DARSP14868 501 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 EIF4BP23588 611 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 ARL2P36404 184 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 NFX1Q12986 1120 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 MXD4Q14582 209 aaPredicted RBP17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 FAM228AQ86W67 206 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 LRRC15Q8TF66 581 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 SPATA32Q96LK8 384 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 RUSC1Q9BVN2 902 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 ERVK-5Q9HDB9 667 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 RCOR1Q9UKL0 485 aa17.64■□□□□ 0.41
CCDC28A-201ENST00000332797 GPR182O15218 404 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 ASAP2O43150 1006 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 CSDE1O75534 798 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 LRIT3Q3SXY7 679 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 ODR4Q5SWX8 454 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 FAM109BQ6ICB4 259 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 RNF149Q8NC42 400 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 LEO1Q8WVC0 666 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 POLD4Q9HCU8 107 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 TSHZ2Q9NRE2 1034 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 PCDHA7Q9UN72 937 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 ST3GAL5Q9UNP4 418 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 MICAL3Q7RTP6 2002 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 GRXCR1A8MXD5 290 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 ATP2A2P16615 1042 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 FGFR4P22455 802 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 GLRA2P23416 452 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 PHKA2P46019 1235 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 SLC12A3P55017 1021 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 DEFB103AP81534 67 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 CAPSQ13938 189 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 TFDP1Q14186 410 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 DHX8Q14562 1220 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms