RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 VAV3Q9UKW4 847 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 STBD1O95210 358 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 FGFR4P22455 802 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 EIF4BP23588 611 aaKnown RBP21.92■■□□□ 1.1
LIME1-201ENST00000309546 PSMC5P62195 406 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 NR5A1Q13285 461 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 PPP2R5CQ13362 524 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 DSC3Q14574 896 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 PLA2G4FQ68DD2 849 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 PPP4R3AQ6IN85 833 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 PTCRAQ6ISU1 281 aaPredicted RBP21.92■■□□□ 1.1
LIME1-201ENST00000309546 POTEDQ86YR6 584 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 ZNF710Q8N1W2 664 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 FAM20AQ96MK3 541 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 NAP1L4Q99733 375 aaKnown RBP21.92■■□□□ 1.1
LIME1-201ENST00000309546 TMEM161AQ9NX61 479 aa21.92■■□□□ 1.1
LIME1-201ENST00000309546 SEC24BO95487 1268 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 DARSP14868 501 aaKnown RBP21.91■■□□□ 1.1
LIME1-201ENST00000309546 IL9P15248 144 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 NAALADL2Q58DX5 795 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 RNF169Q8NCN4 708 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 NSUN7Q8NE18 718 aaKnown RBP21.91■■□□□ 1.1
LIME1-201ENST00000309546 POF1BQ8WVV4 589 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 IGFLR1Q9H665 355 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 HCSTQ9UBK5 93 aa21.91■■□□□ 1.1
LIME1-201ENST00000309546 JAK2O60674 1132 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 DNAJB1P25685 340 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 QARSP47897 775 aaKnown RBP21.9■■□□□ 1.1
LIME1-201ENST00000309546 DNM2P50570 870 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 HYAL1Q12794 435 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 NCAPH2Q6IBW4 605 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 ANO5Q75V66 913 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 SPPL3Q8TCT6 385 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 NEK9Q8TD19 979 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 HAS1Q92839 578 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 CEP89Q96ST8 783 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 ELAC1Q9H777 363 aaKnown RBP21.9■■□□□ 1.1
LIME1-201ENST00000309546 AAASQ9NRG9 546 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 PCDHB12Q9Y5F1 795 aa21.9■■□□□ 1.1
LIME1-201ENST00000309546 TBX3O15119 743 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 CSDE1O75534 798 aaKnown RBP21.89■■□□□ 1.09
LIME1-201ENST00000309546 GTF2F1P35269 517 aaKnown RBP eCLIP21.89■■□□□ 1.093e-6■□□□□ 10.3
LIME1-201ENST00000309546 IRS1P35568 1242 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 CAMK1Q14012 370 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 RHPN2Q8IUC4 686 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 ABI1Q8IZP0 508 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 GCOM2Q9BZD3 368 aaPredicted RBP21.89■■□□□ 1.09
LIME1-201ENST00000309546 TYW1Q9NV66 732 aaKnown RBP21.89■■□□□ 1.09
LIME1-201ENST00000309546 SUCLA2Q9P2R7 463 aaPredicted RBP21.89■■□□□ 1.09
LIME1-201ENST00000309546 ARID2Q68CP9 1835 aa21.89■■□□□ 1.09
LIME1-201ENST00000309546 A0A087WZ62 844 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 NCK2O43639 380 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 DKC1O60832 514 aaKnown RBP eCLIP21.88■■□□□ 1.09
LIME1-201ENST00000309546 MAFO75444 373 aaPredicted RBP21.88■■□□□ 1.09
LIME1-201ENST00000309546 FAM189BP81408 668 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 TRIM29Q14134 588 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 COL19A1Q14993 1142 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 THNSL1Q8IYQ7 743 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 PPP2R3CQ969Q6 453 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 NLRP4Q96MN2 994 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 FDXACB1Q9BRP7 624 aaPredicted RBP21.88■■□□□ 1.09
LIME1-201ENST00000309546 LXNQ9BS40 222 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 TMEM117Q9H0C3 514 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 CYP26B1Q9NR63 512 aa21.88■■□□□ 1.09
LIME1-201ENST00000309546 IGKV6-21A0A0C4DH24 114 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 GRXCR2A6NFK2 248 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 HOXA2O43364 376 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 BAG4O95429 457 aaKnown RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 P4HBP07237 508 aaKnown RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 NPEPPSP55786 919 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 CLUL1Q15846 466 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 PUS10Q3MIT2 529 aaKnown RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 ADGRD2Q7Z7M1 963 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 ECHDC2Q86YB7 292 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 SLFN12Q8IYM2 578 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 COLGALT1Q8NBJ5 622 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 TNFRSF25Q93038 417 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 CEP170P1Q96L14 293 aa21.87■■□□□ 1.09
LIME1-201ENST00000309546 JPH2Q9BR39 696 aaPredicted RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 BMP2KQ9NSY1 1161 aaPredicted RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 WRAP73Q9P2S5 460 aaPredicted RBP21.87■■□□□ 1.09
LIME1-201ENST00000309546 BTBD18B2RXH4 712 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 LINC01565O15544 149 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 LAG3P18627 525 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 SFPQP23246 707 aaKnown RBP eCLIP21.86■■□□□ 1.09
LIME1-201ENST00000309546 SSTR3P32745 418 aaPredicted RBP21.86■■□□□ 1.09
LIME1-201ENST00000309546 LTBRP36941 435 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 POLGP54098 1239 aaPredicted RBP21.86■■□□□ 1.09
LIME1-201ENST00000309546 CDC42EP1Q00587 391 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 CYP4A11Q02928 519 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 ST3GAL1Q11201 340 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 EPHA7Q15375 998 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 ZNF410Q86VK4 478 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 KSR1Q8IVT5 923 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 FAM178BQ8IXR5 827 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 DIS3L2Q8IYB7 885 aaKnown RBP21.86■■□□□ 1.09
LIME1-201ENST00000309546 MICAL1Q8TDZ2 1067 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 SLC7A3Q8WY07 619 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 DYDC2Q96IM9 177 aa21.86■■□□□ 1.09
LIME1-201ENST00000309546 RNF19AQ9NV58 838 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms