RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PFKFB3Q16875 520 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 NXF1Q9UBU9 619 aaKnown RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 LCMT1Q9UIC8 334 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 ZBTB12Q9Y330 459 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 NEDD4P46934 1319 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 CFAP69A5D8W1 941 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 KPNA7A9QM74 516 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 CYB5R4Q7L1T6 521 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 MB21D2Q8IYB1 491 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 IRX2Q9BZI1 471 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 PCYT1AP49585 367 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 ADAM22Q9P0K1 906 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 GOLGA8IPA6NC78 632 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 GOLGA8JA6NMD2 632 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 TCP10L2B9ZVM9 353 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 MAN1A2O60476 641 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 GGPS1O95749 300 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 CHEK2O96017 543 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 RCAN1P53805 252 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 CCDC137Q6PK04 289 aaKnown RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 CCNI2Q6ZMN8 369 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-201ENST00000307662 RASGRP2Q7LDG7 609 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 DGKHQ86XP1 1220 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 KIAA0825Q8IV33 1275 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 STAG2Q8N3U4 1231 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 HSPH1Q92598 858 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 HNRNPCL1O60812 293 aaKnown RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 USP17L8P0C7I0 530 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 TNFAIP1Q13829 316 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 SH2D3CQ8N5H7 860 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 PRMT1Q99873 361 aaKnown RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 KANSL2Q9H9L4 492 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 XPOTO43592 962 aaKnown RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 AGTP01019 485 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 TAC1P20366 129 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 KIF19Q2TAC6 998 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 TBC1D9BQ66K14 1250 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 PDXDC1Q6P996 788 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 SPICE1Q8N0Z3 855 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 FLAD1Q8NFF5 587 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 DYNLL2Q96FJ2 89 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 NCAPD2Q15021 1401 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 A0A1B0GTH6 734 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 LPXNO60711 386 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 DIAPH2O60879 1101 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 ABL1P00519 1130 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 CTTNQ14247 550 aaKnown RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 C4orf50Q6ZRC1 276 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 BZW1Q7L1Q6 419 aaKnown RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 ZNF564Q8TBZ8 553 aaPredicted RBP18.52■□□□□ 0.56
SYNPO-201ENST00000307662 ING2Q9H160 280 aa18.52■□□□□ 0.56
SYNPO-201ENST00000307662 USP17L3A6NCW0 530 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 USP17L4A6NCW7 530 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 FOXN1O15353 648 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 COASYQ13057 564 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 PRKG1Q13976 671 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 MIS18BP1Q6P0N0 1132 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 USP17L1Q7RTZ2 530 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 TTLL11Q8NHH1 800 aa18.52■□□□□ 0.55
SYNPO-201ENST00000307662 LIMA1Q9UHB6 759 aaKnown RBP18.51■□□□□ 0.55
SYNPO-201ENST00000307662 TRAF3IP3Q9Y228 551 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 CCDC22O60826 627 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 BTBD6Q96KE9 485 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 WNT8AQ9H1J5 351 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 TCP11X1B4DZS4 312 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 ZNF185O15231 689 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 RASGRF1Q13972 1273 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 METTL16Q86W50 562 aaKnown RBP18.51■□□□□ 0.55
SYNPO-201ENST00000307662 NUP85Q9BW27 656 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 BRIP1Q9BX63 1249 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 GOLGA8MH3BSY2 632 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 HNRNPCP07910 306 aaKnown RBP eCLIP18.51■□□□□ 0.55
SYNPO-201ENST00000307662 SLC30A9Q6PML9 568 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 TEX9Q8N6V9 391 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 SLC26A7Q8TE54 656 aa18.51■□□□□ 0.55
SYNPO-201ENST00000307662 hCG_2014768A0A024R1R8 64 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SFR1Q86XK3 245 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 DHX38Q92620 1227 aaKnown RBP18.5■□□□□ 0.55
SYNPO-201ENST00000307662 GFM2Q969S9 779 aaKnown RBP18.5■□□□□ 0.55
SYNPO-201ENST00000307662 EDEM3Q9BZQ6 932 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SNX25Q9H3E2 840 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 AMACRQ9UHK6 382 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SNX5Q9Y5X3 404 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 CCDC195A0A1B0GUA6 201 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 PALM3A6NDB9 673 aaPredicted RBP18.5■□□□□ 0.55
SYNPO-201ENST00000307662 KIF28PB7ZC32 967 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 BMP3P12645 472 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 CORO7P57737 925 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SURF1Q15526 300 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 SYDE2Q5VT97 1194 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 TRIM59Q8IWR1 403 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 LY9Q9HBG7 655 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 UBN2Q6ZU65 1347 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 ZNF233A6NK53 670 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 INO80B-WBP1J3KQ70 363 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 DNAJC6O75061 913 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 MCAMP43121 646 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 GRM1Q13255 1194 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 DOK7Q18PE1 504 aa18.5■□□□□ 0.55
SYNPO-201ENST00000307662 INO80BQ9C086 356 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms