RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 MTHFSDQ2M296 383 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 IFNL3Q8IZI9 196 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TRIM56Q9BRZ2 755 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 SEZ6LQ9BYH1 1024 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TRIM54Q9BYV2 358 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 AP4S1Q9Y587 144 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ZW10O43264 779 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MFAP3LO75121 409 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MDM2Q00987 491 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 ZNF772Q68DY9 489 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 UGT3A1Q6NUS8 523 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 UBE2R2Q712K3 238 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 PCYOX1LQ8NBM8 494 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PNMA1Q8ND90 353 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CBX8Q9HC52 389 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 SUN2Q9UH99 717 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 PNMA6FA0A0J9YX94 578 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ATP2B1P20020 1258 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 HSPA1LP34931 641 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 FKBP1AP62942 108 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 CHCHD4Q8N4Q1 142 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NECAB1Q8N987 351 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NRDE2Q9H7Z3 1164 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 H0Y626 953 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 KCNQ3O43525 872 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TRIM16O95361 564 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 YY1P25490 414 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CRYMQ14894 314 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 FAM26FQ5R3K3 315 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 EZH1Q92800 747 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 OXCT2Q9BYC2 517 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 COA1Q9GZY4 146 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 C1orf115Q9H7X2 142 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NCKAP5LQ9HCH0 1330 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 A8MXQ7 604 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 E9PMD0 336 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 EIF3HO15372 352 aaKnown RBP eCLIP4.29□□□□□ -1.72
USH2A-201ENST00000307340 KLHL2O95198 593 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ANO5Q75V66 913 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 DEPTORQ8TB45 409 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 RILPQ96NA2 401 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 UBA2Q9UBT2 640 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 ANKRD36CQ5JPF3 1778 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TBC1D8O95759 1140 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MAGEA1P43355 309 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CBX1P83916 185 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 SNX29Q8TEQ0 813 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NT5C1BQ96P26 610 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 BMP10O95393 424 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 COBLL1Q53SF7 1204 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 FAM92BQ6ZTR7 304 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PARVBQ9HBI1 364 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 IP6K2Q9UHH9 426 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CSADQ9Y600 493 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NPHP4O75161 1426 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 PNMA8CA0A1B0GUJ8 204 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ZRANB2O95218 330 aaKnown RBP eCLIP4.29□□□□□ -1.72
USH2A-201ENST00000307340 RPN1P04843 607 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 NR1D1P20393 614 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NR2F2P24468 414 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 RPS12P25398 132 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 PDIA3P30101 505 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 CCZ1BP86790 482 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CCZ1P86791 482 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 ITIH4Q14624 930 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 FAM186BQ8IYM0 893 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 RPUSD2Q8IZ73 545 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 OR9Q1Q8NGQ5 310 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 COG1Q8WTW3 980 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CEP95Q96GE4 821 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 FOPNLQ96NB1 174 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MIS18AQ9NYP9 233 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 GZMAP12544 262 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 EEF2P13639 858 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 BASP1P80723 227 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 TCP11X2Q5H9J9 407 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 AGBL2Q5U5Z8 902 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ZMYM5Q9UJ78 669 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ACTL7BQ9Y614 415 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CDY2AQ9Y6F7 541 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CDY1Q9Y6F8 540 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MED1Q15648 1581 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 KLRF2D3W0D1 207 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ATP11CQ8NB49 1132 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 LRRC39Q96DD0 335 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ANO4Q32M45 955 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 RABL6Q3YEC7 729 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 NT5DC1Q5TFE4 455 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 LAMB1P07942 1786 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TRAPPC3O43617 180 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MSH2P43246 934 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 RASGRF1Q13972 1273 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MORF4L2Q15014 288 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 OSBPL9Q96SU4 736 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 LSG1Q9H089 658 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 ASNSD1Q9NWL6 643 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 STAP1Q9ULZ2 295 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ACAT1P24752 427 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ADCY8P40145 1251 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms