RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PREPLQ4J6C6 727 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 NME9Q86XW9 330 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ACTRT1Q8TDG2 376 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MYD88Q99836 296 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM109Q9BVC6 243 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 OSBPL10Q9BXB5 764 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SNX25Q9H3E2 840 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ABCB6Q9NP58 842 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 FANCLQ9NW38 375 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 WDR35Q9P2L0 1181 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 CLTCQ00610 1675 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 WDR91A4D1P6 747 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 GNGT2O14610 69 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 AFPP02771 609 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MARK3P27448 753 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 BEND6Q5SZJ8 279 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 HIBCHQ6NVY1 386 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TRAPPC11Q7Z392 1133 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 C2CD5Q86YS7 1000 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM126BQ8IUX1 230 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 BEST2Q8NFU1 509 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 LARP4BQ92615 738 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 VPS33BQ9H267 617 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SSU72Q9NP77 194 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SPINK5Q9NQ38 1064 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 RGL1Q9NZL6 768 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 RTCBQ9Y3I0 505 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF839A8K0R7 811 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 EXOC3O60645 756 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLC18A1P54219 525 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TSPY1Q01534 308 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MCL1Q07820 350 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGEF6Q15052 776 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SPATS1Q496A3 300 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SKAP1Q86WV1 359 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF654Q8IZM8 581 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 FNBP1Q96RU3 617 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLF1Q9BQI6 1058 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 FUT8Q9BYC5 575 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 PRDM11Q9NQV5 511 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF212Q9UDV6 495 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLC24A2Q9UI40 661 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SMIM23A6NLE4 172 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 NVLO15381 856 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TBXAS1P24557 533 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 HPDP32754 393 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ARL4CP56559 192 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZC3H12BQ5HYM0 836 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZBTB33Q86T24 672 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLC35F6Q8N357 371 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 STKLD1Q8NE28 680 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SNX29Q8TEQ0 813 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 RSPH1Q8WYR4 309 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 HIC2Q96JB3 615 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 EPAS1Q99814 870 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLC38A10Q9HBR0 1119 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 PLAGL2Q9UPG8 496 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 SLC4A4Q9Y6R1 1079 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 PJA2O43164 708 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 KATNA1O75449 491 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 HSPA1AP0DMV8 641 aaKnown RBP5.59□□□□□ -1.52
SCN1A-201ENST00000303395 HSPA1BP0DMV9 641 aaKnown RBP5.59□□□□□ -1.52
SCN1A-201ENST00000303395 MYL6BP14649 208 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 STX1BP61266 288 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 CCT2P78371 535 aaKnown RBP5.59□□□□□ -1.52
SCN1A-201ENST00000303395 RNF207Q6ZRF8 634 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 DDX54Q8TDD1 881 aaKnown RBP5.59□□□□□ -1.52
SCN1A-201ENST00000303395 HDAC7Q8WUI4 952 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 SRPK1Q96SB4 655 aaKnown RBP5.59□□□□□ -1.52
SCN1A-201ENST00000303395 CHPF2Q9P2E5 772 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 ATP8A1Q9Y2Q0 1164 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 KDM6BO15054 1643 aa5.59□□□□□ -1.52
SCN1A-201ENST00000303395 MED7O43513 233 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SHOX2O60902 331 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HLA-DPA1P20036 260 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PCYT1AP49585 367 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HP1BP3Q5SSJ5 553 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CC2D2BQ6DHV5 1058 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SLFN12LQ6IEE8 588 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ALDH16A1Q8IZ83 802 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PYROXD1Q8WU10 500 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 FAM20AQ96MK3 541 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ZSCAN10Q96SZ4 725 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PAPOLBQ9NRJ5 636 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 C1orf112Q9NSG2 853 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 ZFATQ9P243 1243 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HPCAL4Q9UM19 191 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SPAG17Q6Q759 2223 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 HSPD1P10809 573 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 COPB2P35606 906 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 EIF4A1P60842 406 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 CALCRLQ16602 461 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 EXOC3L4Q17RC7 722 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PLEKHM3Q6ZWE6 761 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 USP6NLQ92738 828 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 LARP6Q9BRS8 491 aaKnown RBP5.58□□□□□ -1.52
SCN1A-201ENST00000303395 NDST4Q9H3R1 872 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 SYNDIG1Q9H7V2 258 aa5.58□□□□□ -1.52
SCN1A-201ENST00000303395 PCDHA4Q9UN74 947 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms