RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 GPRC5CQ9NQ84 441 aa17.27■□□□□ 0.36
HERPUD1-201ENST00000300302 CPA4Q9UI42 421 aa17.27■□□□□ 0.36
HERPUD1-201ENST00000300302 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.27■□□□□ 0.36
HERPUD1-201ENST00000300302 MCM3APO60318 1980 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 EPB41P11171 864 aaKnown RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 ATP4AP20648 1035 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 POLGP54098 1239 aaPredicted RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 NCKAP1LP55160 1127 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 PPP2R3AQ06190 1150 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 GOLGA8FQ08AF8 430 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 GOLGA8DPQ0D2H9 430 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 SREBF2Q12772 1141 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 MAMDC4Q6UXC1 1216 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 HAUS6Q7Z4H7 955 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 IFNL1Q8IU54 200 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 TRIM59Q8IWR1 403 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 C17orf53Q8N3J3 647 aaPredicted RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 PCMTD1Q96MG8 357 aaPredicted RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 PCYT2Q99447 389 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 NAA15Q9BXJ9 866 aaKnown RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 PDLIM7Q9NR12 457 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 CGNQ9P2M7 1197 aaKnown RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 ARMCX3Q9UH62 379 aaPredicted RBP17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 PPME1Q9Y570 386 aa17.27■□□□□ 0.35
HERPUD1-201ENST00000300302 ADGRA2Q96PE1 1338 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 CCDC169A6NNP5 214 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 ARHGAP6O43182 974 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 ABCD1P33897 745 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 GTF2BQ00403 316 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 SYCP1Q15431 976 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 HSDL1Q3SXM5 330 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 KSR1Q8IVT5 923 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 SPIRE2Q8WWL2 714 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 SLC7A3Q8WY07 619 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 GLG1Q92896 1179 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 HVCN1Q96D96 273 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 IFT74Q96LB3 600 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 PDGFCQ9NRA1 345 aa17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.26■□□□□ 0.35
HERPUD1-201ENST00000300302 H0YCG3 227 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 CLIC2O15247 247 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 TRIM21P19474 475 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 RFC5P40937 340 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 FXR1P51114 621 aaKnown RBP eCLIP17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 SNRPFP62306 86 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 MYBPC2Q14324 1141 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 EMC2Q15006 297 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 PLPPR4Q7Z2D5 763 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 MSL3Q8N5Y2 521 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 MAML3Q96JK9 1138 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 NTPCRQ9BSD7 190 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 KMT5AQ9NQR1 393 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 AGPAT3Q9NRZ7 376 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 EXOC7Q9UPT5 735 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 ZNF236Q9UL36 1845 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 EMSYQ7Z589 1322 aa17.25■□□□□ 0.35
HERPUD1-201ENST00000300302 RBM47A0AV96 593 aaKnown RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 SLC16A4O15374 487 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 LGR5O75473 907 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 NPTX2P47972 431 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 SLC26A2P50443 739 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 LAMC2Q13753 1193 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 FIGNQ5HY92 759 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 TAPT1Q6NXT6 567 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 BBXQ8WY36 941 aaPredicted RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 MKNK1Q9BUB5 465 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 DHX33Q9H6R0 707 aaKnown RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 CAPN11Q9UMQ6 739 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 FRMD4BQ9Y2L6 1034 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 LUC7L2Q9Y383 392 aaKnown RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 NKRFO15226 690 aaKnown RBP eCLIP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 CCP110O43303 1012 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 TLR2O60603 784 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 AKAP3O75969 853 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 XRCC5P13010 732 aaKnown RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 SCP2P22307 547 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 PSMC2P35998 433 aaKnown RBP17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 TMEM139Q8IV31 216 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 SLC9A9Q8IVB4 645 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 EXOC8Q8IYI6 725 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 HHIPL1Q96JK4 782 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 SMARCAD1Q9H4L7 1026 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 ZFYVE28Q9HCC9 887 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 XPNPEP1Q9NQW7 623 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 KCND1Q9NSA2 647 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 ABHD10Q9NUJ1 306 aa17.24■□□□□ 0.35
HERPUD1-201ENST00000300302 GH1P01241 217 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 KRT9P35527 623 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 TSR1Q2NL82 804 aaKnown RBP17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 TMEM161BQ8NDZ6 487 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 ZNF397Q8NF99 534 aaPredicted RBP17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 TMEM174Q8WUU8 243 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 COPS5Q92905 334 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 TINF2Q9BSI4 451 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 POLR3FQ9H1D9 316 aaPredicted RBP17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 ABHD16BQ9H3Z7 469 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 DMAC2Q9NW81 257 aa17.23■□□□□ 0.35
HERPUD1-201ENST00000300302 TTC26A0AVF1 554 aa17.22■□□□□ 0.35
HERPUD1-201ENST00000300302 SNAI1O95863 264 aaPredicted RBP17.22■□□□□ 0.35
HERPUD1-201ENST00000300302 PPP2R5AQ15172 486 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms