RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 PTPRFP10586 1907 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 A0A087X0T9 212 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 CXCL11O14625 94 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 SLC16A3O15427 465 aaKnown RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 NCK2O43639 380 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 GH2P01242 217 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 AFPP02771 609 aaKnown RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 FAM228BP0C875 321 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 RPL13P26373 211 aaKnown RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 PRKCIP41743 596 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 SKOR1P84550 965 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 RAPGEF1Q13905 1077 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 DNAJC21Q5F1R6 531 aaKnown RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 EMC10Q5UCC4 262 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 CTU1Q7Z7A3 348 aaKnown RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 CD302Q8IX05 232 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 NELFCDQ8IXH7 590 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 WHAMMQ8TF30 809 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 PBKQ96KB5 322 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 INPP4AQ96PE3 977 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-201ENST00000277198 ARHGAP39Q9C0H5 1083 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 CPA4Q9UI42 421 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 ZBTB21Q9ULJ3 1066 aa14.11□□□□□ -0.15
C9orf3-201ENST00000277198 GTPBP10A4D1E9 387 aaKnown RBP14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L15C9J2P7 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L13C9JLJ4 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L11C9JVI0 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L18D6R9N7 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L22D6RA61 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L17D6RBQ6 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L19D6RCP7 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L20D6RJB6 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 MPHOSPH10O00566 681 aaKnown RBP14.1□□□□□ -0.15
C9orf3-201ENST00000277198 MEIS2O14770 477 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 MED24O75448 989 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 CIITAP33076 1130 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 MATR3P43243 847 aaKnown RBP eCLIP14.1□□□□□ -0.155e-6■■■□□ 15.1
C9orf3-201ENST00000277198 HMGCS2P54868 508 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 TNNC1P63316 161 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ARHGAP4P98171 946 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 SLC7A5Q01650 507 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L24Q0WX57 530 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 GIT2Q14161 759 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 CDC37Q16543 378 aaPredicted RBP14.1□□□□□ -0.15
C9orf3-201ENST00000277198 TATDN1Q6P1N9 297 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 USP17L6PQ6QN14 398 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ANKRD23Q86SG2 305 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 CATSPER3Q86XQ3 398 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 CLEC10AQ8IUN9 316 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ZNF280CQ8ND82 737 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 AMNQ9BXJ7 453 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 FGFBP2Q9BYJ0 223 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ZFYVE28Q9HCC9 887 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ADAMTS1Q9UHI8 967 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 TMEM59LQ9UK28 342 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 INTUQ9ULD6 942 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 ADGRA2Q96PE1 1338 aa14.1□□□□□ -0.15
C9orf3-201ENST00000277198 GFPT2O94808 682 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 XRCC5P13010 732 aaKnown RBP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 UCHL3P15374 230 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 CTGFP29279 349 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 MAGEA9P43362 315 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 IRAK1P51617 712 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 MTMR2Q13614 643 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 SLFN13Q68D06 897 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 DPY19L2P1Q6NXN4 242 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 IRF2BP2Q7Z5L9 587 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 IQCKQ8N0W5 287 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 FAM133AQ8N9E0 248 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 TAF4BQ92750 862 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 CALR3Q96L12 384 aaKnown RBP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 PSMB7Q99436 277 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 CAPS2Q9BXY5 557 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 TYW1Q9NV66 732 aaKnown RBP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 TBC1D7Q9P0N9 293 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 A0A0A6YYK5 440 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 FLOT1O75955 427 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 SREBF1P36956 1147 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 CORO7P57737 925 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 SP3Q02447 781 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 NFIL3Q16649 462 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 EXOC3L4Q17RC7 722 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 OTOP1Q7RTM1 612 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 VPS36Q86VN1 386 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 FMNL3Q8IVF7 1028 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 USP38Q8NB14 1042 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 GMCL1P1Q8NEA9 526 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 LMBR1Q8WVP7 490 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 SPAG5Q96R06 1193 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 POLR3CQ9BUI4 534 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-201ENST00000277198 TMEM51Q9NW97 253 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 RSPH14Q9UHP6 348 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 LCMT1Q9UIC8 334 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 SYNPO2Q9UMS6 1093 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 DAAM1Q9Y4D1 1078 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 TRIM17Q9Y577 477 aa14.09□□□□□ -0.15
C9orf3-201ENST00000277198 EIF3HO15372 352 aaKnown RBP eCLIP14.08□□□□□ -0.16
C9orf3-201ENST00000277198 HEXIM1O94992 359 aaKnown RBP14.08□□□□□ -0.16
C9orf3-201ENST00000277198 GLI1P08151 1106 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms