RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 REEP2Q9BRK0 252 aa13.99□□□□□ -0.17
COL8A1-202ENST00000273342 TRIM6Q9C030 488 aaPredicted RBP13.99□□□□□ -0.17
COL8A1-202ENST00000273342 RAB17Q9H0T7 212 aa13.99□□□□□ -0.17
COL8A1-202ENST00000273342 PSTPIP2Q9H939 334 aa13.99□□□□□ -0.17
COL8A1-202ENST00000273342 STXBP5LQ9Y2K9 1186 aa13.99□□□□□ -0.17
COL8A1-202ENST00000273342 PPFIA2O75334 1257 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 DNAJC8O75937 253 aaPredicted RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 PAEPP09466 180 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TRIM49P0CI25 452 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TRIM49CP0CI26 452 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 STAT1P42224 750 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 PRR16Q569H4 304 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 MICAL1Q8TDZ2 1067 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 HES6Q96HZ4 224 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 PABPC3Q9H361 631 aaKnown RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 CNOT10Q9H9A5 744 aaKnown RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 SHANK3Q9BYB0 1731 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TCP11X1B4DZS4 312 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 IGF2BP3O00425 579 aaKnown RBP eCLIP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 ATMINO43313 823 aaPredicted RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 POLD1P28340 1107 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 RPL21P46778 160 aaKnown RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 MAP2K1Q02750 393 aaPredicted RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 COG2Q14746 738 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TNIP1Q15025 636 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 KNOP1Q1ED39 458 aaKnown RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 ZC2HC1CQ53FD0 456 aaPredicted RBP13.98□□□□□ -0.17
COL8A1-202ENST00000273342 KIAA1755Q5JYT7 1200 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 SPDL1Q96EA4 605 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 ECT2Q9H8V3 914 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 JMJD4Q9H9V9 463 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 ATP6V0A4Q9HBG4 840 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 CTNNAL1Q9UBT7 734 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TBK1Q9UHD2 729 aa13.98□□□□□ -0.17
COL8A1-202ENST00000273342 TCRBV7S2A1N4TA0A589 114 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 SRRM3A6NNA2 597 aaPredicted RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 ANKRD63C9JTQ0 380 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 NR3C1P04150 777 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 AKR1B1P15121 316 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 ALDH5A1P51649 535 aaPredicted RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 POU5F1Q01860 360 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 EPHA7Q15375 998 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 ANKRD36CQ5JPF3 1778 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 NUGGCQ68CJ6 796 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DPY19L2P1Q6NXN4 242 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 TLDC1Q6P9B6 456 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 SYCE1Q8N0S2 351 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 RASGEF1CQ8N431 466 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 SETDB2Q96T68 719 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DHX36Q9H2U1 1008 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 SIX2Q9NPC8 291 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 ZDHHC18Q9NUE0 388 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 GOLGA6L10A0A0M3HER8 536 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 CCDC189A1A4V9 331 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 CCDC169A6NNP5 214 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 MRPL12P52815 198 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 KLRC3Q07444 240 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DRAP1Q14919 205 aaPredicted RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DUPD1Q68J44 220 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 TRMT1LQ7Z2T5 733 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 ARMC9Q7Z3E5 817 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 CATSPER3Q86XQ3 398 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 LINC00116Q8NCU8 138 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 PIGOQ8TEQ8 1089 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 SLC35C1Q96A29 364 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DDX23Q9BUQ8 820 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 BHMT2Q9H2M3 363 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 RIOX1Q9H6W3 641 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 COG5Q9UP83 839 aa13.97□□□□□ -0.17
COL8A1-202ENST00000273342 BZW2Q9Y6E2 419 aaKnown RBP13.97□□□□□ -0.17
COL8A1-202ENST00000273342 DDX3YO15523 660 aaKnown RBP13.96□□□□□ -0.17
COL8A1-202ENST00000273342 GCKP35557 465 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 CYP2J2P51589 502 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 CCNHP51946 323 aaPredicted RBP13.96□□□□□ -0.17
COL8A1-202ENST00000273342 PTENP60484 403 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 TRIP13Q15645 432 aaPredicted RBP13.96□□□□□ -0.17
COL8A1-202ENST00000273342 C10orf76Q5T2E6 689 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 ZDHHC24Q6UX98 284 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 BARGINQ6ZT62 677 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 C3orf20Q8ND61 904 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 SLC17A8Q8NDX2 589 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 KLHL29Q96CT2 875 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 BTBD6Q96KE9 485 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 NT5C3AQ9H0P0 336 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 ZNF287Q9HBT7 754 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 CTTNBP2NLQ9P2B4 639 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 DNAJC12Q9UKB3 198 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 STRCP1A6NGW2 1772 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 RPTORQ8N122 1335 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 RASGRF2O14827 1237 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 ZBTB39O15060 712 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 GH1P01241 217 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 MMP13P45452 471 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 VPS41P49754 854 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 EIF3BP55884 814 aaKnown RBP13.96□□□□□ -0.17
COL8A1-202ENST00000273342 SNX1Q13596 522 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 GIT2Q14161 759 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 MESDQ14696 234 aa13.96□□□□□ -0.17
COL8A1-202ENST00000273342 SAMD1Q6SPF0 538 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms