RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 POTEEQ6S8J3 1075 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 SRBD1Q8N5C6 995 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 MASTLQ96GX5 879 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ZNF341Q9BYN7 854 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ADAMTS13Q76LX8 1427 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 GMNCA6NCL1 334 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 FAM187AA6NFU0 413 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 NCK2O43639 380 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TOM1L1O75674 476 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ATP1A1P05023 1023 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 PSMA2P25787 234 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ARL4CP56559 192 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 KRT76Q01546 638 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 TAF11Q15544 211 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 PDXDC1Q6P996 788 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 ZNF449Q6P9G9 518 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 MCUQ8NE86 351 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 RMDN3Q96TC7 470 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 NCAPGQ9BPX3 1015 aa11.53□□□□□ -0.56
CD44-201ENST00000263398 NGRNQ9NPE2 291 aaKnown RBP11.53□□□□□ -0.56
CD44-201ENST00000263398 SPDYE16A6NNV3 312 aaPredicted RBP11.52□□□□□ -0.56
CD44-201ENST00000263398 RASA4BC9J798 803 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 CHUKO15111 745 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 RASA4O43374 803 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 SRGAP2CP0DJJ0 459 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 FCER1AP12319 257 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 PLS3P13797 630 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 SPDYE2Q495Y8 402 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 C12orf60Q5U649 245 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 HEXIM2Q96MH2 286 aaKnown RBP11.52□□□□□ -0.56
CD44-201ENST00000263398 EFHD1Q9BUP0 239 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 IRX2Q9BZI1 471 aaPredicted RBP11.52□□□□□ -0.56
CD44-201ENST00000263398 LCMT1Q9UIC8 334 aa11.52□□□□□ -0.56
CD44-201ENST00000263398 F5H6K3 240 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 VSNL1P62760 191 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 PPP2R2AP63151 447 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 SATB1Q01826 763 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 KLRC3Q07444 240 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 ANKRD40Q6AI12 368 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 RAB44Q7Z6P3 723 aaPredicted RBP11.52□□□□□ -0.57
CD44-201ENST00000263398 ADSSL1Q8N142 457 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 MORC4Q8TE76 937 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 RFFLQ8WZ73 363 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 PFASO15067 1338 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 P4HBP07237 508 aaKnown RBP11.52□□□□□ -0.57
CD44-201ENST00000263398 VAMP7P51809 220 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 ARMCX2Q7L311 632 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 DYDC2Q96IM9 177 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 PHF20Q9BVI0 1012 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 TRIM55Q9BYV6 548 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 FGFR1OP2Q9NVK5 253 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 SNX12Q9UMY4 172 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 CLDN3O15551 220 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 SMIM24O75264 130 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 FTLP02792 175 aaPredicted RBP11.52□□□□□ -0.57
CD44-201ENST00000263398 MMP10P09238 476 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 PMS2P54278 862 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 FMR1Q06787 632 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-201ENST00000263398 E2F4Q16254 413 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 EEPD1Q7L9B9 569 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 RASGRP2Q7LDG7 609 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 RSPH3Q86UC2 560 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 STAG2Q8N3U4 1231 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 PPWD1Q96BP3 646 aaKnown RBP11.52□□□□□ -0.57
CD44-201ENST00000263398 TTC25Q96NG3 672 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 ITIH6Q6UXX5 1313 aa11.52□□□□□ -0.57
CD44-201ENST00000263398 FRMD3A2A2Y4 597 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 QARSP47897 775 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 SPOUT1Q5T280 376 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 FRMD5Q7Z6J6 570 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ZNF564Q8TBZ8 553 aaPredicted RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 ATP6V1G3Q96LB4 118 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 CHP1Q99653 195 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 TRIM56Q9BRZ2 755 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 HAUS8Q9BT25 410 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 HEMGNQ9BXL5 484 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ATP6V0A4Q9HBG4 840 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 NOP53Q9NZM5 478 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 THEGQ9P2T0 379 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 SCOCQ9UIL1 159 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 POLR1AO95602 1720 aaPredicted RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 NRXN1Q9ULB1 1477 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ATP5HO75947 161 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 CALB1P05937 261 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ZNF211Q13398 564 aaPredicted RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 RC3H1Q5TC82 1133 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 ARHGAP27Q6ZUM4 889 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 WDR75Q8IWA0 830 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 SRRM1Q8IYB3 904 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 THNSL1Q8IYQ7 743 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ADGRF4Q8IZF3 695 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 DCLK2Q8N568 766 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 RUBCNQ92622 972 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ZNF512BQ96KM6 892 aaPredicted RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 NLRP4Q96MN2 994 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 TRIM4Q9C037 500 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 KLC2Q9H0B6 622 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 POLD4Q9HCU8 107 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 PTPRUQ92729 1446 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms