RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CCDC85BQ15834 202 aaPredicted RBP25.67■■□□□ 1.7
LSM4-201ENST00000252816 OTUD6AQ7L8S5 288 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 NEK9Q8TD19 979 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 NLRP7Q8WX94 980 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 SCLT1Q96NL6 688 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 JPH2Q9BR39 696 aaPredicted RBP25.67■■□□□ 1.7
LSM4-201ENST00000252816 RGS18Q9NS28 235 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 SMC3Q9UQE7 1217 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 PPME1Q9Y570 386 aa25.67■■□□□ 1.7
LSM4-201ENST00000252816 PRRC2BQ5JSZ5 2229 aaKnown RBP25.67■■□□□ 1.7
LSM4-201ENST00000252816 DENND3A2RUS2 1198 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 CSDE1O75534 798 aaKnown RBP25.66■■□□□ 1.7
LSM4-201ENST00000252816 FGFR4P22455 802 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 TECP42680 631 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 SARSP49591 514 aaKnown RBP25.66■■□□□ 1.7
LSM4-201ENST00000252816 XKR9Q5GH70 373 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 FAM43BQ6ZT52 329 aaPredicted RBP25.66■■□□□ 1.7
LSM4-201ENST00000252816 RHPN2Q8IUC4 686 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 KSR1Q8IVT5 923 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 SLC7A3Q8WY07 619 aa25.66■■□□□ 1.7
LSM4-201ENST00000252816 BMP2KQ9NSY1 1161 aaPredicted RBP25.66■■□□□ 1.7
LSM4-201ENST00000252816 COL4A4P53420 1690 aaPredicted RBP25.66■■□□□ 1.7
LSM4-201ENST00000252816 ADGRA3Q8IWK6 1321 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 A0A087WWV3 80 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 A0A087WZ62 844 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 C9IYK1 514 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 LINC00271P0C7V0 271 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 SPATA31C1P0DKV0 1188 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 IBSPP21815 317 aaPredicted RBP25.65■■□□□ 1.7
LSM4-201ENST00000252816 RFC5P40937 340 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 POLGP54098 1239 aaPredicted RBP25.65■■□□□ 1.7
LSM4-201ENST00000252816 EPC2Q52LR7 807 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 MCTP1Q6DN14 999 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.65■■□□□ 1.7
LSM4-201ENST00000252816 MICALL1Q8N3F8 863 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 TMEM143Q96AN5 459 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 FDXACB1Q9BRP7 624 aaPredicted RBP25.65■■□□□ 1.7
LSM4-201ENST00000252816 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.65■■□□□ 1.7
LSM4-201ENST00000252816 PCDHB6Q9Y5E3 794 aa25.65■■□□□ 1.7
LSM4-201ENST00000252816 GTPBP6O43824 516 aaPredicted RBP25.64■■□□□ 1.7
LSM4-201ENST00000252816 STAG3L1P0CL83 205 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 GATMP50440 423 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 CDC42EP1Q00587 391 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 CUL4AQ13619 759 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 SLC24A5Q71RS6 500 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 TMEM192Q8IY95 271 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 FIBCD1Q8N539 461 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 FBXO22Q8NEZ5 403 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 GCOM2Q9BZD3 368 aaPredicted RBP25.64■■□□□ 1.7
LSM4-201ENST00000252816 PRDM6Q9NQX0 595 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 C1orf112Q9NSG2 853 aa25.64■■□□□ 1.7
LSM4-201ENST00000252816 MED24O75448 989 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 FAM189BP81408 668 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 BTG3Q14201 252 aaPredicted RBP25.63■■□□□ 1.69
LSM4-201ENST00000252816 EMC2Q15006 297 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 ZNF410Q86VK4 478 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 EXOC8Q8IYI6 725 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 PIGOQ8TEQ8 1089 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 NLRP4Q96MN2 994 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 SAMD11Q96NU1 681 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 ANKEF1Q9NU02 776 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 LRFN2Q9ULH4 789 aa25.63■■□□□ 1.69
LSM4-201ENST00000252816 H3BQV1 296 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 CATSPER3Q86XQ3 398 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 PRPF31Q8WWY3 499 aaKnown RBP25.62■■□□□ 1.69
LSM4-201ENST00000252816 XPNPEP1Q9NQW7 623 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 PCDHB7Q9Y5E2 793 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 COL4A3BPQ9Y5P4 624 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 ARID2Q68CP9 1835 aa25.62■■□□□ 1.69
LSM4-201ENST00000252816 RARRES1P49788 294 aa25.61■■□□□ 1.69
LSM4-201ENST00000252816 PTGDRQ13258 359 aa25.61■■□□□ 1.69
LSM4-201ENST00000252816 PAN2Q504Q3 1202 aaKnown RBP25.61■■□□□ 1.69
LSM4-201ENST00000252816 CMTR2Q8IYT2 770 aaKnown RBP25.61■■□□□ 1.69
LSM4-201ENST00000252816 PSPC1Q8WXF1 523 aaKnown RBP25.61■■□□□ 1.69
LSM4-201ENST00000252816 CLP1Q92989 425 aaKnown RBP25.61■■□□□ 1.69
LSM4-201ENST00000252816 POLR3CQ9BUI4 534 aaPredicted RBP25.61■■□□□ 1.69
LSM4-201ENST00000252816 IFT122Q9HBG6 1241 aa25.61■■□□□ 1.69
LSM4-201ENST00000252816 TUFT1Q9NNX1 390 aa25.61■■□□□ 1.69
LSM4-201ENST00000252816 GAS2O43903 313 aaKnown RBP25.6■■□□□ 1.69
LSM4-201ENST00000252816 FXR2P51116 673 aaKnown RBP eCLIP25.6■■□□□ 1.696e-8■□□□□ 9.9
LSM4-201ENST00000252816 LAMTOR4Q0VGL1 99 aa25.6■■□□□ 1.69
LSM4-201ENST00000252816 FAM102BQ5T8I3 360 aa25.6■■□□□ 1.69
LSM4-201ENST00000252816 LARP1BQ659C4 914 aaKnown RBP25.6■■□□□ 1.69
LSM4-201ENST00000252816 MTRQ99707 1265 aa25.6■■□□□ 1.69
LSM4-201ENST00000252816 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.6■■□□□ 1.69
LSM4-201ENST00000252816 MRPL42Q9Y6G3 142 aaKnown RBP25.6■■□□□ 1.69
LSM4-201ENST00000252816 SRGAP2CP0DJJ0 459 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 ZSCAN20P17040 1043 aaPredicted RBP25.59■■□□□ 1.69
LSM4-201ENST00000252816 RPA1P27694 616 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 CTNNB1P35222 781 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 FERMT3Q86UX7 667 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 TCP11Q8WWU5 503 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 TMEM161AQ9NX61 479 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 LMCD1Q9NZU5 365 aa25.59■■□□□ 1.69
LSM4-201ENST00000252816 NLRC5Q86WI3 1866 aa25.58■■□□□ 1.69
LSM4-201ENST00000252816 H3BNC9 293 aa25.58■■□□□ 1.69
LSM4-201ENST00000252816 XRCC6P12956 609 aaKnown RBP eCLIP25.58■■□□□ 1.69
LSM4-201ENST00000252816 BMPR1AP36894 532 aa25.58■■□□□ 1.69
LSM4-201ENST00000252816 GPM6BQ13491 265 aa25.58■■□□□ 1.69
LSM4-201ENST00000252816 IL17AQ16552 155 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms