RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ARHGEF26Q96DR7 871 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 POP1Q99575 1024 aaKnown RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 RUSC1Q9BVN2 902 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 RTFDC1Q9BY42 306 aaPredicted RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 ERVK-5Q9HDB9 667 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 SERPINB13Q9UIV8 391 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 PCDHGC5Q9Y5F6 944 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 HSPA9P38646 679 aaKnown RBP12.96□□□□□ -0.33
USHBP1-201ENST00000252597 FAM47EQ6ZV65 393 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 HS2ST1Q7LGA3 356 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 UBE2TQ9NPD8 197 aaPredicted RBP12.96□□□□□ -0.33
USHBP1-201ENST00000252597 A6NNZ2 444 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 TISP43B9A030 160 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 TTLL1O95922 423 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 ERFP50548 548 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 NEDD9Q14511 834 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 TUBB8Q3ZCM7 444 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 NUGGCQ68CJ6 796 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 TRIM68Q6AZZ1 485 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 IRF2BP2Q7Z5L9 587 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 NEK9Q8TD19 979 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 CHMP6Q96FZ7 201 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 VEZTQ9HBM0 779 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 PLCB1Q9NQ66 1216 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 SUFUQ9UMX1 484 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 IGSF9BQ9UPX0 1349 aa12.96□□□□□ -0.33
USHBP1-201ENST00000252597 SORBS3O60504 671 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 CPP00450 1065 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 PMS2P54278 862 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 MTMR3Q13615 1198 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 CLEC4GQ6UXB4 293 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 C16orf86Q6ZW13 317 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 PPM1KQ8N3J5 372 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 BANK1Q8NDB2 785 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 C1orf54Q8WWF1 131 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 MTFR1LQ9H019 292 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 PCDHAC2Q9Y5I4 1007 aa12.96□□□□□ -0.34
USHBP1-201ENST00000252597 DUOX1Q9NRD9 1551 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 GCLMP48507 274 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 FNTAP49354 379 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ARHGAP4P98171 946 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 SP4Q02446 784 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 NFIAQ12857 509 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 EPC2Q52LR7 807 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ODR4Q5SWX8 454 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 TMC3Q7Z5M5 1100 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 CCDC50Q8IVM0 306 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 FUKQ8N0W3 1084 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 SLC20A1Q8WUM9 679 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 KRT35Q92764 455 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 CEP63Q96MT8 703 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 PWWP2AQ96N64 755 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 XPO6Q96QU8 1125 aaKnown RBP12.95□□□□□ -0.34
USHBP1-201ENST00000252597 FAM167BQ9BTA0 163 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 RABGAP1Q9Y3P9 1069 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ITIH3Q06033 890 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 PDIA5Q14554 519 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 PPP2R5AQ15172 486 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 GRIPAP1Q4V328 841 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ARSHQ5FYA8 562 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 SLFN13Q68D06 897 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 HOOK3Q86VS8 718 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 FAM178BQ8IXR5 827 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 PRCCQ92733 491 aaPredicted RBP12.95□□□□□ -0.34
USHBP1-201ENST00000252597 RAB17Q9H0T7 212 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 GANQ9H2C0 597 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 FRMD4BQ9Y2L6 1034 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 F8VZ95 297 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ZBTB5O15062 677 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 TRAPPC3O43617 180 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 RPS6KA4O75676 772 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ZNF543Q08ER8 600 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ACCSLQ4AC99 568 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 ANKRD20A8PQ5CZ79 823 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 KRT27Q7Z3Y8 459 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 MICAL1Q8TDZ2 1067 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 HEMGNQ9BXL5 484 aa12.95□□□□□ -0.34
USHBP1-201ENST00000252597 DDX4Q9NQI0 724 aaKnown RBP12.95□□□□□ -0.34
USHBP1-201ENST00000252597 KDM3AQ9Y4C1 1321 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 FTLP02792 175 aaPredicted RBP12.94□□□□□ -0.34
USHBP1-201ENST00000252597 HLA-DOAP06340 250 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 ASPRV1Q53RT3 343 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CYP4F22Q6NT55 531 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 FAM196AQ6ZSG2 479 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 SYCE1Q8N0S2 351 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 FGFR1OP2Q9NVK5 253 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 GEMIN8Q9NWZ8 242 aaKnown RBP12.94□□□□□ -0.34
USHBP1-201ENST00000252597 MTRF1LQ9UGC7 380 aaKnown RBP12.94□□□□□ -0.34
USHBP1-201ENST00000252597 USTQ9Y2C2 406 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 ECM29Q5VYK3 1845 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 FSBPO95073 299 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 LCA5LO95447 670 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CREB1P16220 341 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 ELF1P32519 619 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 CALCOCO2Q13137 446 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 DAB2IPQ5VWQ8 1189 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 PPP4R3AQ6IN85 833 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 ZFPM1Q8IX07 1006 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 SLC30A5Q8TAD4 765 aa12.94□□□□□ -0.34
USHBP1-201ENST00000252597 STAMBPL1Q96FJ0 436 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms