RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 RNF219Q5W0B1 726 aaPredicted RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 RASGRP4Q8TDF6 673 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 NLRP4Q96MN2 994 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 TEX13BQ9BXU2 312 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 MAN1B1Q9UKM7 699 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 PPRC1Q5VV67 1664 aaKnown RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 MAGEB2O15479 319 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 CAND2O75155 1236 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 CLCN6P51797 869 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 ADKP55263 362 aaKnown RBP13.68□□□□□ -0.22
USP40-201ENST00000251722 TTBK2Q6IQ55 1244 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 PADI6Q6TGC4 694 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 CCDC13Q8IYE1 715 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP40-201ENST00000251722 STK38LQ9Y2H1 464 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 KRT1P04264 644 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 MYBL1P10243 752 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 STILQ15468 1287 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 PRR5LQ6MZQ0 368 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 LRRC31Q6UY01 552 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 MICALL2Q8IY33 904 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 TMEM35BQ8NCS4 154 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 RAD54LQ92698 747 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 OLFM3Q96PB7 478 aa13.68□□□□□ -0.22
USP40-201ENST00000251722 ASAP2O43150 1006 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 PAMP19021 973 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 TGFB2P61812 414 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 SNRPFP62306 86 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 ZBTB33Q86T24 672 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 TEX9Q8N6V9 391 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 PAGE5Q96GU1 130 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 NUF2Q9BZD4 464 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 UBE2TQ9NPD8 197 aaPredicted RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 CAMTA2O94983 1202 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 SRGAP2CP0DJJ0 459 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 NNMTP40261 264 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 ETF1P62495 437 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 FOXO4P98177 505 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 RESTQ13127 1097 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 THOC5Q13769 683 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 TFDP2Q14188 446 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 ERICH1Q86X53 443 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 OTUD5Q96G74 571 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 SCYL1Q96KG9 808 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 ACAP3Q96P50 834 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 CNOT7Q9UIV1 285 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 ANGPTL3Q9Y5C1 460 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 INHBAP08476 426 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 TAP1Q03518 808 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 IFT88Q13099 833 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 VEPH1Q14D04 833 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 RESP18Q5W5W9 173 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 STAP1Q9ULZ2 295 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 KIAA1210Q9ULL0 1709 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 TSGA10IPQ3SY00 556 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 TWF2Q6IBS0 349 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 FBXO38Q6PIJ6 1188 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 PI16Q6UXB8 463 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 EGFL6Q8IUX8 553 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 RYBPQ8N488 228 aaPredicted RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 RBM41Q96IZ5 413 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 BHMT2Q9H2M3 363 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 UBAP1Q9NZ09 502 aa13.67□□□□□ -0.22
USP40-201ENST00000251722 USP42Q9H9J4 1324 aaKnown RBP13.67□□□□□ -0.22
USP40-201ENST00000251722 MIF4GDA9UHW6 222 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 PGRMC1O00264 195 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 YY1P25490 414 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 CEP95Q96GE4 821 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 RPAP3Q9H6T3 665 aaPredicted RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 ASNSD1Q9NWL6 643 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 ENO4A6NNW6 628 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 ECEL1O95672 775 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 CPP00450 1065 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 GSTA1P08263 222 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 GSTA2P09210 222 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 HOXA13P31271 388 aaPredicted RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 DRP2Q13474 957 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 ZNF568Q3ZCX4 644 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 GAS2L3Q86XJ1 694 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 KCTD6Q8NC69 237 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 HVCN1Q96D96 273 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 PANX2Q96RD6 677 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 DRC3Q9H069 523 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 NXF1Q9UBU9 619 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 FARP1Q9Y4F1 1045 aaPredicted RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 PCDHA10Q9Y5I2 948 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 PDS5AQ29RF7 1337 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 IPO5O00410 1097 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 TXNDC9O14530 226 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 Q3C1V9 767 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 C12orf60Q5U649 245 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 EEPD1Q7L9B9 569 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 MB21D2Q8IYB1 491 aaPredicted RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 RDM1Q8NG50 284 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 SPATA33Q96N06 139 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 FAM49AQ9H0Q0 323 aaPredicted RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 TECPR2O15040 1411 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 PEX3P56589 373 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 TAF1CQ15572 869 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms