RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C RPC53P25441 422 aa1.37□□□□□ -2.19
PCF11YDR228C SPS19P32573 292 aaKnown RBP1.37□□□□□ -2.19
PCF11YDR228C YBR241CP38142 488 aa1.37□□□□□ -2.19
PCF11YDR228C MRX8Q05473 314 aa1.37□□□□□ -2.19
PCF11YDR228C LDS2Q08218 356 aa1.37□□□□□ -2.19
PCF11YDR228C YAL067W-AQ8TGK6 75 aa1.37□□□□□ -2.19
PCF11YDR228C FUR1P18562 216 aaKnown RBP1.37□□□□□ -2.19
PCF11YDR228C RRP7P25368 297 aaPredicted RBP1.37□□□□□ -2.19
PCF11YDR228C RAD23P32628 398 aaKnown RBP1.37□□□□□ -2.19
PCF11YDR228C UFE1P41834 346 aa1.37□□□□□ -2.19
PCF11YDR228C STB1P42845 420 aa1.37□□□□□ -2.19
PCF11YDR228C RTT102P53330 157 aa1.37□□□□□ -2.19
PCF11YDR228C MRX11Q03079 207 aa1.37□□□□□ -2.19
PCF11YDR228C VTI1Q04338 217 aa1.37□□□□□ -2.19
PCF11YDR228C GAT3Q07928 141 aa1.37□□□□□ -2.19
PCF11YDR228C YDL109CQ12103 647 aa1.37□□□□□ -2.19
PCF11YDR228C SAL1D6W196 494 aa1.36□□□□□ -2.19
PCF11YDR228C INH1P01097 85 aa1.36□□□□□ -2.19
PCF11YDR228C RPL16AP26784 199 aaKnown RBP1.36□□□□□ -2.19
PCF11YDR228C PHO91P27514 894 aa1.36□□□□□ -2.19
PCF11YDR228C DBF4P32325 704 aa1.36□□□□□ -2.19
PCF11YDR228C RBG1P39729 369 aa1.36□□□□□ -2.19
PCF11YDR228C CDH1P53197 566 aa1.36□□□□□ -2.19
PCF11YDR228C YGR111WP53265 400 aa1.36□□□□□ -2.19
PCF11YDR228C FAR10Q06001 478 aa1.36□□□□□ -2.19
PCF11YDR228C RPL23AP0CX41 137 aaKnown RBP1.35□□□□□ -2.19
PCF11YDR228C RPL23BP0CX42 137 aaKnown RBP1.35□□□□□ -2.19
PCF11YDR228C MIR1P23641 311 aaKnown RBP1.35□□□□□ -2.19
PCF11YDR228C PMT2P31382 759 aa1.35□□□□□ -2.19
PCF11YDR228C TIP20P33891 701 aa1.35□□□□□ -2.19
PCF11YDR228C ROG1P53118 685 aa1.35□□□□□ -2.19
PCF11YDR228C COS9P36034 407 aa1.35□□□□□ -2.19
PCF11YDR228C ZIM17P42844 174 aa1.35□□□□□ -2.19
PCF11YDR228C EFM3P47163 339 aa1.35□□□□□ -2.19
PCF11YDR228C SLT2Q00772 484 aa1.35□□□□□ -2.19
PCF11YDR228C YDR541CQ03049 344 aa1.35□□□□□ -2.19
PCF11YDR228C AAD15Q08361 143 aa1.35□□□□□ -2.19
PCF11YDR228C LTV1P34078 463 aa1.34□□□□□ -2.19
PCF11YDR228C SDH4P37298 181 aa1.34□□□□□ -2.19
PCF11YDR228C AIM23P47015 356 aa1.34□□□□□ -2.19
PCF11YDR228C CWC22P53333 577 aaKnown RBP1.34□□□□□ -2.19
PCF11YDR228C ERO1Q03103 563 aa1.34□□□□□ -2.19
PCF11YDR228C VPS72Q03388 795 aa1.34□□□□□ -2.19
PCF11YDR228C YPR096CO13587 100 aa1.33□□□□□ -2.2
PCF11YDR228C DAL5P15365 543 aa1.33□□□□□ -2.2
PCF11YDR228C MDH1P17505 334 aaKnown RBP RIP-Chip data1.33□□□□□ -2.2not detected
PCF11YDR228C COX10P21592 462 aa1.33□□□□□ -2.2
PCF11YDR228C SKG6P32900 734 aaPredicted RBP1.33□□□□□ -2.2
PCF11YDR228C YKR015CP36111 568 aa1.33□□□□□ -2.2
PCF11YDR228C RMT2Q03305 412 aa1.33□□□□□ -2.2
PCF11YDR228C SCS7Q03529 384 aa1.33□□□□□ -2.2
PCF11YDR228C YMR010WQ03687 405 aa1.33□□□□□ -2.2
PCF11YDR228C API2Q04413 109 aa1.33□□□□□ -2.2
PCF11YDR228C APC4Q04601 652 aa1.33□□□□□ -2.2
PCF11YDR228C YLH47Q06493 454 aa1.33□□□□□ -2.2
PCF11YDR228C STE2D6VTK4 431 aa1.33□□□□□ -2.2
PCF11YDR228C MRPL8P22353 238 aa1.33□□□□□ -2.2
PCF11YDR228C GGC1P38988 300 aa1.33□□□□□ -2.2
PCF11YDR228C YIL059CP40520 121 aa1.33□□□□□ -2.2
PCF11YDR228C SLM3Q12093 417 aa1.33□□□□□ -2.2
PCF11YDR228C SCH9P11792 824 aaKnown RBP1.32□□□□□ -2.2
PCF11YDR228C YHR177WP38867 453 aa1.32□□□□□ -2.2
PCF11YDR228C NAS6P50086 228 aa1.32□□□□□ -2.2
PCF11YDR228C PRM1P53835 661 aa1.32□□□□□ -2.2
PCF11YDR228C MEH1Q02205 184 aa1.32□□□□□ -2.2
PCF11YDR228C GAS2Q06135 555 aa1.32□□□□□ -2.2
PCF11YDR228C YOL029CQ08187 201 aa1.32□□□□□ -2.2
PCF11YDR228C DCI1Q08558 271 aa1.32□□□□□ -2.2
PCF11YDR228C YDR018CQ12185 396 aa1.32□□□□□ -2.2
PCF11YDR228C RPS23AP0CX29 145 aaKnown RBP1.31□□□□□ -2.2
PCF11YDR228C RPS23BP0CX30 145 aa1.31□□□□□ -2.2
PCF11YDR228C SWE1P32944 819 aa1.31□□□□□ -2.2
PCF11YDR228C JNM1P36224 373 aa1.31□□□□□ -2.2
PCF11YDR228C BDH1P39714 382 aa1.31□□□□□ -2.2
PCF11YDR228C SUR7P54003 302 aa1.31□□□□□ -2.2
PCF11YDR228C SMD1Q02260 146 aaPredicted RBP1.31□□□□□ -2.2
PCF11YDR228C IPK1Q06667 281 aa1.31□□□□□ -2.2
PCF11YDR228C YDL211CQ12121 372 aa1.31□□□□□ -2.2
PCF11YDR228C YOR338WQ99326 363 aa1.31□□□□□ -2.2
PCF11YDR228C UTR5P32630 166 aa1.31□□□□□ -2.2
PCF11YDR228C NAB3P38996 802 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2not detected
PCF11YDR228C GMC1Q04399 608 aa1.31□□□□□ -2.2
PCF11YDR228C PDE2P06776 526 aa1.3□□□□□ -2.2
PCF11YDR228C CUP2P15315 225 aa1.3□□□□□ -2.2
PCF11YDR228C SSE1P32589 693 aaKnown RBP1.3□□□□□ -2.2
PCF11YDR228C VAM7P32912 316 aa1.3□□□□□ -2.2
PCF11YDR228C SCC4P40090 624 aa1.3□□□□□ -2.2
PCF11YDR228C BUD27P43573 796 aaKnown RBP RIP-Chip data1.3□□□□□ -2.2not detected
PCF11YDR228C FRE8Q12209 686 aa1.3□□□□□ -2.2
PCF11YDR228C GPM3Q12326 303 aa1.3□□□□□ -2.2
PCF11YDR228C FLO11P08640 1367 aa1.29□□□□□ -2.2
PCF11YDR228C CPT1P17898 393 aa1.29□□□□□ -2.2
PCF11YDR228C ALK2P32789 676 aaPredicted RBP1.29□□□□□ -2.2
PCF11YDR228C EFM1P38732 585 aa1.29□□□□□ -2.2
PCF11YDR228C MLH1P38920 769 aa1.29□□□□□ -2.2
PCF11YDR228C TRM82Q03774 444 aa1.29□□□□□ -2.2
PCF11YDR228C DIB1Q06819 143 aaPredicted RBP1.29□□□□□ -2.2
PCF11YDR228C SHS1Q07657 551 aa1.29□□□□□ -2.2
PCF11YDR228C DET1Q99288 334 aaKnown RBP1.29□□□□□ -2.2
PCF11YDR228C RPS14AP06367 137 aaKnown RBP1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms