RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KARSQ15046 597 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SLC44A4Q53GD3 710 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ATL3Q6DD88 541 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TRAF7Q6Q0C0 670 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DENND6AQ8IWF6 608 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RYBPQ8N488 228 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF655Q8N720 491 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RNF169Q8NCN4 708 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DISC1Q9NRI5 854 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MSRAQ9UJ68 235 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DOCK6Q96HP0 2047 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PTPRKQ15262 1439 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 A0A0J9YVX5 310 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CAPN8A6NHC0 703 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC85CA6NKD9 419 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 F13A1P00488 732 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 UQCRBP14927 111 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 C4BPBP20851 252 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GSTT1P30711 240 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GARSP41250 739 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 UBXN1Q04323 297 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PAK2Q13177 524 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 NNTQ13423 1086 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CUL3Q13618 768 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF658Q5TYW1 1059 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TMED8Q6PL24 325 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC42Q96M95 316 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GID8Q9NWU2 228 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KLHL28Q9NXS3 571 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GGA1Q9UJY5 639 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RAD54L2Q9Y4B4 1467 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GSTA4O15217 222 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TFRCP02786 760 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 LDLRAP1Q5SW96 308 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGEF16Q5VV41 709 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SCYL2Q6P3W7 929 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 HORMAD1Q86X24 394 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM48Q8IWZ4 208 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 AHI1Q8N157 1196 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 BSNDQ8WZ55 320 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZBTB9Q96C00 473 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 NT5C3AQ9H0P0 336 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PLCL2Q9UPR0 1127 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GINS2Q9Y248 185 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CAB39Q9Y376 341 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GCC2Q8IWJ2 1684 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RPTORQ8N122 1335 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RTEL1-TNFRSF6BF6WH68 1400 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TAF4O00268 1085 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CA12O43570 354 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TSPAN9O75954 239 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CHEK2O96017 543 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 EPB41P11171 864 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CACNB1Q02641 598 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 IFT88Q13099 833 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TCEA2Q15560 299 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RCSD1Q6JBY9 416 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RINT1Q6NUQ1 792 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RINLQ6ZS11 566 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SRBD1Q8N5C6 995 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MYCBPAPQ8TBZ2 947 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MCOLN3Q8TDD5 553 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SHDQ96IW2 340 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FANCEQ9HB96 536 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DBF4Q9UBU7 674 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RIPK3Q9Y572 518 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC61Q9Y6R9 512 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FKBP9O95302 570 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CHGBP05060 677 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 HSPA1AP0DMV8 641 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 HSPA1BP0DMV9 641 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MCM7P33993 719 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ME3Q16798 604 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TCEAL5Q5H9L2 206 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FSCBQ5H9T9 825 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SYT10Q6XYQ8 523 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FKBP9P1Q75LS8 142 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MIGA1Q8NAN2 632 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MOSPD2Q8NHP6 518 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CALML6Q8TD86 181 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KLHL4Q9C0H6 718 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZMYND12Q9H0C1 365 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MPP6Q9NZW5 540 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PCDHGA4Q9Y5G9 962 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RAD54BQ9Y620 910 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DENND3A2RUS2 1198 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 H0YJX3 145 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 S100A9P06702 114 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RXRAP19793 462 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MLH1P40692 756 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MECOMQ03112 1051 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KRT71Q3SY84 523 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 BROXQ5VW32 411 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FRA10AC1Q70Z53 315 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KIAA0825Q8IV33 1275 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 WDR35Q9P2L0 1181 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PCDHGB4Q9UN71 923 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PACSIN2Q9UNF0 486 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TDRD15B5MCY1 1934 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SUPT3HB4E1H0 165 aa2.96□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms