RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ANKRD54Q6NXT1 300 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 ATOH1Q92858 354 aaPredicted RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 LSG1Q9H089 658 aaKnown RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 TMEM161AQ9NX61 479 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 PUF60Q9UHX1 559 aaKnown RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 CDH22Q9UJ99 828 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 ZDBF2Q9HCK1 2354 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 COL1A2P08123 1366 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 FSD2A1L4K1 749 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 HIDE1A8MVS5 230 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 MEIS1O00470 390 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 FSCN2O14926 492 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 GFRA3O60609 400 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 ATG7O95352 703 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 SREBF1P36956 1147 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 CLCN3P51790 818 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 CRYBB1P53674 252 aaPredicted RBP17.05■□□□□ 0.32
SYNE2-228ENST00000639659 PPP1R18Q6NYC8 613 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 APOA5Q6Q788 366 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 ABHD15Q6UXT9 468 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 TMC7Q7Z402 723 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 SUSD6Q92537 303 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 MRPS27Q92552 414 aaKnown RBP17.05■□□□□ 0.32
SYNE2-228ENST00000639659 SCLT1Q96NL6 688 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 CWH43Q9H720 699 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 RBM28Q9NW13 759 aaKnown RBP17.05■□□□□ 0.32
SYNE2-228ENST00000639659 AKT3Q9Y243 479 aa17.05■□□□□ 0.32
SYNE2-228ENST00000639659 V9GY48 417 aaPredicted RBP17.05■□□□□ 0.32
SYNE2-228ENST00000639659 IGKV6D-21A0A0A0MT36 114 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 GOLGA8AA7E2F4 631 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 GOLGA8BA8MQT2 603 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 C22orf31O95567 290 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 PDGFBP01127 241 aaPredicted RBP17.04■□□□□ 0.32
SYNE2-228ENST00000639659 AP3B2Q13367 1082 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 PDE12Q6L8Q7 609 aaKnown RBP17.04■□□□□ 0.32
SYNE2-228ENST00000639659 ASIC4Q96FT7 647 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 ZNF558Q96NG5 402 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 ZNF577Q9BSK1 485 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 TMEM117Q9H0C3 514 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 SAMM50Q9Y512 469 aa17.04■□□□□ 0.32
SYNE2-228ENST00000639659 MYH9P35579 1960 aaKnown RBP17.04■□□□□ 0.32
SYNE2-228ENST00000639659 FAM86B1E9PN63 330 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 H0Y858 1186 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 IPO5O00410 1097 aaKnown RBP17.03■□□□□ 0.32
SYNE2-228ENST00000639659 ZBTB43O43298 467 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 ST18O60284 1047 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 FAM86B2P0C5J1 330 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 AVPR2P30518 371 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 SYCE2Q6PIF2 218 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 KCNT2Q6UVM3 1135 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 SGMS1Q86VZ5 419 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 LRRC43Q8N309 656 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 LRRC71Q8N4P6 559 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 MAP7D2Q96T17 732 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 ESYT1Q9BSJ8 1104 aa17.03■□□□□ 0.32
SYNE2-228ENST00000639659 ZBTB42B2RXF5 422 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 HOXA2O43364 376 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 WEE2P0C1S8 567 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 ZSCAN20P17040 1043 aaPredicted RBP17.02■□□□□ 0.32
SYNE2-228ENST00000639659 ATP4AP20648 1035 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 NLRP11P59045 1033 aaKnown RBP17.02■□□□□ 0.32
SYNE2-228ENST00000639659 KRT17Q04695 432 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 LRRC55Q6ZSA7 311 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 KREMEN2Q8NCW0 462 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 BBXQ8WY36 941 aaPredicted RBP17.02■□□□□ 0.32
SYNE2-228ENST00000639659 SNX27Q96L92 541 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 CASD1Q96PB1 797 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 S1PR5Q9H228 398 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 NGRNQ9NPE2 291 aaKnown RBP17.02■□□□□ 0.32
SYNE2-228ENST00000639659 BARHL2Q9NY43 387 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 GABBR1Q9UBS5 961 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 BRPF3Q9ULD4 1205 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 NR2E1Q9Y466 385 aa17.02■□□□□ 0.32
SYNE2-228ENST00000639659 KLF18A0A0U1RQI7 1052 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 GPR32O75388 356 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 PSAPP07602 524 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 FGFR4P22455 802 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 PPM1AP35813 382 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 METAP2P50579 478 aaKnown RBP eCLIP17.01■□□□□ 0.31
SYNE2-228ENST00000639659 PLCB3Q01970 1234 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 DSC3Q14574 896 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 CES5AQ6NT32 575 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 NIPA1Q7RTP0 329 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 TMEM87AQ8NBN3 555 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 HELQQ8TDG4 1101 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 CASP10Q92851 521 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 ELAC1Q9H777 363 aaKnown RBP17.01■□□□□ 0.31
SYNE2-228ENST00000639659 RNF19AQ9NV58 838 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 SPG21Q9NZD8 308 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 LZTS1Q9Y250 596 aa17.01■□□□□ 0.31
SYNE2-228ENST00000639659 NT5C1B-RDH14C9J2C7 533 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 hCG_1984214I3L0E3 225 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 DHX15O43143 795 aaKnown RBP17■□□□□ 0.31
SYNE2-228ENST00000639659 HOXB8P17481 243 aaPredicted RBP17■□□□□ 0.31
SYNE2-228ENST00000639659 CLK2P49760 499 aaKnown RBP17■□□□□ 0.31
SYNE2-228ENST00000639659 FGD1P98174 961 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 SMC1AQ14683 1233 aaKnown RBP17■□□□□ 0.31
SYNE2-228ENST00000639659 NECTIN1Q15223 517 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 TPRNQ4KMQ1 711 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 RARS2Q5T160 578 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms