RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ZHX3Q9H4I2 956 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 ACAD9Q9H845 621 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 LZTFL1Q9NQ48 299 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 JADE2Q9NQC1 790 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 UBIAD1Q9Y5Z9 338 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 LCTP09848 1927 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 CENPFP49454 3210 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 CTCFP49711 727 aaPredicted RBP20.19■□□□□ 0.82
CLN3-263ENST00000637871 FCGRTP55899 365 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 NSMFQ6X4W1 530 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 SLC30A10Q6XR72 485 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 PLEKHH3Q7Z736 793 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 SFR1Q86XK3 245 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 TPH2Q8IWU9 490 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 TSC1Q92574 1164 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 DYDC2Q96IM9 177 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 PURBQ96QR8 312 aaKnown RBP20.19■□□□□ 0.82
CLN3-263ENST00000637871 TIPINQ9BVW5 301 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 MROH8Q9H579 483 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 MMRN2Q9H8L6 949 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 AGPAT5Q9NUQ2 364 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 CEP72Q9P209 647 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 GABRQQ9UN88 632 aa20.19■□□□□ 0.82
CLN3-263ENST00000637871 NPHP3-ACAD11A0A0J9YXS1 232 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 MAFGO15525 162 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 PGK2P07205 417 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 P4HBP07237 508 aaKnown RBP20.18■□□□□ 0.82
CLN3-263ENST00000637871 GUCY2CP25092 1073 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 CYP4A11Q02928 519 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 ALCAMQ13740 583 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 SPA17Q15506 151 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 TKFCQ3LXA3 575 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 ZNF569Q5MCW4 686 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 CEP112Q8N8E3 955 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 GOLGA5Q8TBA6 731 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 CCDC42Q96M95 316 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 MMP19Q99542 508 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 NHEJ1Q9H9Q4 299 aaPredicted RBP20.18■□□□□ 0.82
CLN3-263ENST00000637871 PARVGQ9HBI0 331 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 A1CFQ9NQ94 594 aaKnown RBP20.18■□□□□ 0.82
CLN3-263ENST00000637871 RGL1Q9NZL6 768 aa20.18■□□□□ 0.82
CLN3-263ENST00000637871 ZNFX1Q9P2E3 1918 aaKnown RBP20.18■□□□□ 0.82
CLN3-263ENST00000637871 SSU72P8A0A1W2PR75 194 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 LYPLA2O95372 231 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 MAPTP10636 758 aaKnown RBP20.17■□□□□ 0.82
CLN3-263ENST00000637871 ZNF131P52739 623 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 KIF22Q14807 665 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 ANKRD35Q8N283 1001 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 ACRBPQ8NEB7 543 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 CHST13Q8NET6 341 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 RDM1Q8NG50 284 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 SYTL5Q8TDW5 730 aaPredicted RBP20.17■□□□□ 0.82
CLN3-263ENST00000637871 NAPGQ99747 312 aaPredicted RBP20.17■□□□□ 0.82
CLN3-263ENST00000637871 ZSWIM4Q9H7M6 989 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 TBC1D7Q9P0N9 293 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 CDC23Q9UJX2 597 aa20.17■□□□□ 0.82
CLN3-263ENST00000637871 USO1O60763 962 aaKnown RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 ARP10275 920 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 NR2F2P24468 414 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 ADORA2AP29274 412 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 ARHGAP25P42331 645 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 PRKCZQ05513 592 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 MYBPC2Q14324 1141 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 CACNA2D4Q7Z3S7 1137 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 NELFCDQ8IXH7 590 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 GLIS3Q8NEA6 775 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 MKNK1Q9BUB5 465 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 UNC45AQ9H3U1 944 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 LUC7LQ9NQ29 371 aaKnown RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 ARMCX3Q9UH62 379 aaPredicted RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 DBR1Q9UK59 544 aaKnown RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 DAAM1Q9Y4D1 1078 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 PCDHB13Q9Y5F0 798 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 IVNS1ABPQ9Y6Y0 642 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 LOXHD1Q8IVV2 1947 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 PLXNA1Q9UIW2 1896 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 LCA5LO95447 670 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 COPB2P35606 906 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 BAATQ14032 418 aaPredicted RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 CTTNQ14247 550 aaKnown RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 GRB14Q14449 540 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 KCTD2Q14681 263 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 MIER3Q7Z3K6 550 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 KIAA1328Q86T90 577 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 SLC17A8Q8NDX2 589 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 EEF2KMTQ96G04 330 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 RUSC1Q9BVN2 902 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 KCNH7Q9NS40 1196 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 ARGLU1Q9NWB6 273 aaPredicted RBP20.16■□□□□ 0.82
CLN3-263ENST00000637871 TCEAL9Q9UHQ7 104 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 MYO6Q9UM54 1294 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 ZNF236Q9UL36 1845 aa20.16■□□□□ 0.82
CLN3-263ENST00000637871 ARHGEF35A5YM69 484 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 TADA3O75528 432 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 EPB41P11171 864 aaKnown RBP20.15■□□□□ 0.82
CLN3-263ENST00000637871 ITGB5P18084 799 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 SFNP31947 248 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 CNTN2Q02246 1040 aa20.15■□□□□ 0.82
CLN3-263ENST00000637871 MAPK8IP2Q13387 824 aaPredicted RBP20.15■□□□□ 0.82
CLN3-263ENST00000637871 WHAMMP3Q1A5X7 153 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms