RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RFX1P22670 979 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 TRAF1Q13077 416 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 IFIT1BQ5T764 474 aaKnown RBP16.71■□□□□ 0.27
CLN3-249ENST00000636685 USP17L6PQ6QN14 398 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 OTOP3Q7RTS5 596 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 NME8Q8N427 588 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 AUTS2Q8WXX7 1259 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 RIOX1Q9H6W3 641 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 RALYQ9UKM9 306 aaKnown RBP16.71■□□□□ 0.27
CLN3-249ENST00000636685 CA14Q9ULX7 337 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 PNMA6FA0A0J9YX94 578 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 CYTH3O43739 400 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 TBC1D8BQ0IIM8 1120 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 MTHFD1LQ6UB35 978 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 CCDC149Q6ZUS6 474 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 SLC39A11Q8N1S5 342 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 LRRC43Q8N309 656 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 PIBF1Q8WXW3 757 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 GPRASP2Q96D09 838 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 UBAC1Q9BSL1 405 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 ELAC1Q9H777 363 aaKnown RBP16.7■□□□□ 0.26
CLN3-249ENST00000636685 TBC1D17Q9HA65 648 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 WNT16Q9UBV4 365 aa16.7■□□□□ 0.26
CLN3-249ENST00000636685 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.69■□□□□ 0.26
CLN3-249ENST00000636685 NT5C1B-RDH14C9J2C7 533 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 ITGB5P18084 799 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 NT5C2P49902 561 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 KIAA0319Q5VV43 1072 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 FAM228AQ86W67 206 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 SLC22A17Q8WUG5 538 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 RSAD2Q8WXG1 361 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 PPP1R16BQ96T49 567 aa16.69■□□□□ 0.26
CLN3-249ENST00000636685 DCDC2BA2VCK2 349 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 GPR182O15218 404 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 DSC3Q14574 896 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 SEC23AQ15436 765 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 GPR149Q86SP6 731 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 CABP7Q86V35 215 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 C1orf210Q8IVY1 113 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 TMEM87AQ8NBN3 555 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 CDHR1Q96JP9 859 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 AZI2Q9H6S1 392 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 DLGAP2Q9P1A6 1054 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 IGSF9Q9P2J2 1179 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 DOCK8Q8NF50 2099 aa16.68■□□□□ 0.26
CLN3-249ENST00000636685 POTEMA6NI47 508 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 KLRC1P26715 233 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 METAP2P50579 478 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLN3-249ENST00000636685 GRM4Q14833 912 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 ODR4Q5SWX8 454 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 POTEGQ6S5H5 508 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 FAM43BQ6ZT52 329 aaPredicted RBP16.67■□□□□ 0.26
CLN3-249ENST00000636685 KIAA0319LQ8IZA0 1049 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 ABI1Q8IZP0 508 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 VPS52Q8N1B4 723 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 TNPO1Q92973 898 aaKnown RBP16.67■□□□□ 0.26
CLN3-249ENST00000636685 ZBP1Q9H171 429 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 NCDNQ9UBB6 729 aa16.67■□□□□ 0.26
CLN3-249ENST00000636685 MIA3Q5JRA6 1907 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 MEIS2O14770 477 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 HOXA2O43364 376 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 KINO60870 393 aaKnown RBP16.66■□□□□ 0.26
CLN3-249ENST00000636685 N4BP1O75113 896 aaKnown RBP16.66■□□□□ 0.26
CLN3-249ENST00000636685 SDHBP21912 280 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 MTMR1Q13613 665 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 BMS1Q14692 1282 aaKnown RBP16.66■□□□□ 0.26
CLN3-249ENST00000636685 KIZQ2M2Z5 673 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 CLLU1OSQ5K130 101 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 VARS2Q5ST30 1063 aaKnown RBP16.66■□□□□ 0.26
CLN3-249ENST00000636685 RNF169Q8NCN4 708 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 CUL5Q93034 780 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 OSMRQ99650 979 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 SFXN1Q9H9B4 322 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 JPH1Q9HDC5 661 aaPredicted RBP16.66■□□□□ 0.26
CLN3-249ENST00000636685 FAM208BQ5VWN6 2430 aa16.66■□□□□ 0.26
CLN3-249ENST00000636685 STAT5BP51692 787 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 PLPPR4Q7Z2D5 763 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 MAML2Q8IZL2 1156 aaPredicted RBP16.65■□□□□ 0.26
CLN3-249ENST00000636685 TMEM169Q96HH4 297 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 CHAMP1Q96JM3 812 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 KRT23Q9C075 422 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 SLC9A2Q9UBY0 812 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 CDV3Q9UKY7 258 aaKnown RBP16.65■□□□□ 0.26
CLN3-249ENST00000636685 SIT1Q9Y3P8 196 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 UBIAD1Q9Y5Z9 338 aa16.65■□□□□ 0.26
CLN3-249ENST00000636685 SPDYE4A6NLX3 237 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 PIK3CDO00329 1044 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 ADRB1P08588 477 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 GLULP15104 373 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 CRYBB1P53674 252 aaPredicted RBP16.64■□□□□ 0.25
CLN3-249ENST00000636685 PDE1AP54750 535 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 BCAR1P56945 870 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 COL9A2Q14055 689 aaPredicted RBP16.64■□□□□ 0.25
CLN3-249ENST00000636685 LETM2Q2VYF4 491 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 CYB5R4Q7L1T6 521 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 TMEM173Q86WV6 379 aaPredicted RBP16.64■□□□□ 0.25
CLN3-249ENST00000636685 ECHDC2Q86YB7 292 aa16.64■□□□□ 0.25
CLN3-249ENST00000636685 LRRN2O75325 713 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 CTSAP10619 480 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms