RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	ORC2	Q13416	577 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	ENOX2	Q16206	610 aa	Known RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	OR52E8	Q6IFG1	317 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	COL23A1	Q86Y22	540 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	SPICE1	Q8N0Z3	855 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	NCSTN	Q92542	709 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD2-223	ENST00000636306	AGAP1	Q9UPQ3	857 aa		11.68	□□□□□ -0.54
CHD2-223	ENST00000636306		A0A1B0GVG6	124 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PJA2	O43164	708 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	MMP10	P09238	476 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CCDC166	P0CW27	439 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	YY1	P25490	414 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PEX5	P50542	639 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	POLE2	P56282	527 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	GRIK5	Q16478	980 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306		Q4G0T1	1027 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	SH2D4B	Q5SQS7	431 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	HHIPL2	Q6UWX4	724 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PROM2	Q8N271	834 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	RNF10	Q8N5U6	811 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	ZNF507	Q8TCN5	953 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	TEKT1	Q969V4	418 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	KLHL29	Q96CT2	875 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PBK	Q96KB5	322 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	HINFP	Q9BQA5	517 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	TMEM47	Q9BQJ4	181 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	UBE2O	Q9C0C9	1292 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	RANBP17	Q9H2T7	1088 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PRDM16	Q9HAZ2	1276 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	IL17RB	Q9NRM6	502 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	SCOC	Q9UIL1	159 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	NOVA2	Q9UNW9	492 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	RPL26L1	Q9UNX3	145 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CTNND2	Q9UQB3	1225 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306		A0A1W2PQJ5	194 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	MACROD2	A1Z1Q3	448 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PALM3	A6NDB9	673 aa	Predicted RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	LCA5L	O95447	670 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CALB2	P22676	271 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	EEF1G	P26641	437 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CTNNA1	P35221	906 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	LONP1	P36776	959 aa	Known RBP	11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	DNM2	P50570	870 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	ASPRV1	Q53RT3	343 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	FIGN	Q5HY92	759 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	SOGA3	Q5TF21	947 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	ASRGL1	Q7L266	308 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	KRT25	Q7Z3Z0	450 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PODN	Q7Z5L7	613 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CROCCP2	Q86T23	111 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PAGE5	Q96GU1	130 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	NDN	Q99608	321 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	TIPIN	Q9BVW5	301 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	CSRNP2	Q9H175	543 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	BARHL2	Q9NY43	387 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	PDP2	Q9P2J9	529 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	MAD2L2	Q9UI95	211 aa		11.67	□□□□□ -0.54
CHD2-223	ENST00000636306	RBM47	A0AV96	593 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	USP17L3	A6NCW0	530 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	USP17L4	A6NCW7	530 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306		H0YIN7	160 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306		O00370	1275 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	RIMBP2	O15034	1052 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	CTNND1	O60716	968 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	ATP6V1G1	O75348	118 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	UBOX5	O94941	541 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	RPL13	P26373	211 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	GNA11	P29992	359 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	STAT6	P42226	847 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	TUB	P50607	506 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	MAGOH	P61326	146 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	PAK1	Q13153	545 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	PARP6	Q2NL67	630 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	FAM133B	Q5BKY9	247 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	NFRKB	Q6P4R8	1299 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	PIK3AP1	Q6ZUJ8	805 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	USP17L1	Q7RTZ2	530 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.66	□□□□□ -0.54	5e-10	■■■■■ 95.5
CHD2-223	ENST00000636306	GRAMD1C	Q8IYS0	662 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	RNF168	Q8IYW5	571 aa	Predicted RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	SYCP3	Q8IZU3	236 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	ENDOV	Q8N8Q3	282 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	SUPT20H	Q8NEM7	779 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	AZIN2	Q96A70	460 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	MAGOHB	Q96A72	148 aa	Known RBP	11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	RNPEPL1	Q9HAU8	725 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	C6orf50	Q9HD87	102 aa		11.66	□□□□□ -0.54
CHD2-223	ENST00000636306	GREB1L	Q9C091	1923 aa	Predicted RBP	11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	hCG_1642624	A0A1W2PR95	340 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	ESYT2	A0FGR8	921 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	KLRF2	D3W0D1	207 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	CES2	O00748	559 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	OAS1	P00973	400 aa	Known RBP	11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	LMNA	P02545	664 aa	Known RBP	11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	KRT16	P08779	473 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	HNRNPH3	P31942	346 aa	Known RBP	11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	NOV	P48745	357 aa		11.65	□□□□□ -0.54
CHD2-223	ENST00000636306	SCNN1B	P51168	640 aa		11.65	□□□□□ -0.54

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