RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 RFC5P40937 340 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 NPEPPSP55786 919 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 ATP2C1P98194 919 aaPredicted RBP23.14■■□□□ 1.3
CLN3-240ENST00000631023 CDC42EP1Q00587 391 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 LPIN1Q14693 890 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 XKR9Q5GH70 373 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 LINC01465Q8N7H1 131 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 SLC7A3Q8WY07 619 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 CCDC43Q96MW1 224 aaKnown RBP23.14■■□□□ 1.3
CLN3-240ENST00000631023 CEP89Q96ST8 783 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 ANKEF1Q9NU02 776 aa23.14■■□□□ 1.3
CLN3-240ENST00000631023 VTNP04004 478 aa23.14■■□□□ 1.29
CLN3-240ENST00000631023 RPA1P27694 616 aa23.14■■□□□ 1.29
CLN3-240ENST00000631023 ARL6IP4Q66PJ3 421 aaKnown RBP23.14■■□□□ 1.29
CLN3-240ENST00000631023 CATSPER3Q86XQ3 398 aa23.14■■□□□ 1.29
CLN3-240ENST00000631023 OSBPL7Q9BZF2 842 aa23.14■■□□□ 1.29
CLN3-240ENST00000631023 ZSCAN16Q9H4T2 348 aaPredicted RBP23.14■■□□□ 1.29
CLN3-240ENST00000631023 PTPRSQ13332 1948 aa23.14■■□□□ 1.29
CLN3-240ENST00000631023 IGKV6-21A0A0C4DH24 114 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 SPATA31C1P0DKV0 1188 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 MUTP22033 750 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 CRYBB1P53674 252 aaPredicted RBP23.13■■□□□ 1.29
CLN3-240ENST00000631023 POLGP54098 1239 aaPredicted RBP23.13■■□□□ 1.29
CLN3-240ENST00000631023 WDR5P61964 334 aaKnown RBP23.13■■□□□ 1.29
CLN3-240ENST00000631023 ODR4Q5SWX8 454 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 FAM109BQ6ICB4 259 aaPredicted RBP23.13■■□□□ 1.29
CLN3-240ENST00000631023 IGSF22Q8N9C0 903 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 MTMR6Q9Y217 621 aa23.13■■□□□ 1.29
CLN3-240ENST00000631023 GRXCR1A8MXD5 290 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 NLRP11P59045 1033 aaKnown RBP23.12■■□□□ 1.29
CLN3-240ENST00000631023 RAB30Q15771 203 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 KIZQ2M2Z5 673 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 TCTN1Q2MV58 587 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 FAM43BQ6ZT52 329 aaPredicted RBP23.12■■□□□ 1.29
CLN3-240ENST00000631023 NACC1Q96RE7 527 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 MSRAQ9UJ68 235 aa23.12■■□□□ 1.29
CLN3-240ENST00000631023 MYH15Q9Y2K3 1946 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 ZBTB39O15060 712 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 GAS2O43903 313 aaKnown RBP23.11■■□□□ 1.29
CLN3-240ENST00000631023 MED24O75448 989 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 CCT6AP40227 531 aaKnown RBP23.11■■□□□ 1.29
CLN3-240ENST00000631023 RESTQ13127 1097 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 PPP1R16BQ96T49 567 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 DHX33Q9H6R0 707 aaKnown RBP23.11■■□□□ 1.29
CLN3-240ENST00000631023 SUCLA2Q9P2R7 463 aaPredicted RBP23.11■■□□□ 1.29
CLN3-240ENST00000631023 SZT2Q5T011 3432 aa23.11■■□□□ 1.29
CLN3-240ENST00000631023 TTC3P53804 2025 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 GPR32O75388 356 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 AMHP03971 560 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 PAK2Q13177 524 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 KRT79Q5XKE5 535 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 ZNF579Q8NAF0 562 aaKnown RBP23.1■■□□□ 1.29
CLN3-240ENST00000631023 SPRYD3Q8NCJ5 442 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 PIGOQ8TEQ8 1089 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 SCLT1Q96NL6 688 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 FTHL17Q9BXU8 183 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 AGO3Q9H9G7 860 aaKnown RBP23.1■■□□□ 1.29
CLN3-240ENST00000631023 CDHR5Q9HBB8 845 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 PADI3Q9ULW8 664 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 RPS6KA5O75582 802 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 DNAJB2P25686 324 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 CD52P31358 61 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 IL17AQ16552 155 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 HERC6Q8IVU3 1022 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 TCP11Q8WWU5 503 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 OSMRQ99650 979 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 PBX4Q9BYU1 374 aa23.1■■□□□ 1.29
CLN3-240ENST00000631023 VWA3AA6NCI4 1184 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 GPR182O15218 404 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 MKRN4PQ13434 485 aaPredicted RBP23.09■■□□□ 1.29
CLN3-240ENST00000631023 BECN1Q14457 450 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 SF3A1Q15459 793 aaKnown RBP23.09■■□□□ 1.29
CLN3-240ENST00000631023 SNX29Q8TEQ0 813 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 NLRP7Q8WX94 980 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 ADAMTS10Q9H324 1103 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 DBR1Q9UK59 544 aaKnown RBP23.09■■□□□ 1.29
CLN3-240ENST00000631023 PCDHA11Q9Y5I1 949 aa23.09■■□□□ 1.29
CLN3-240ENST00000631023 DGAT1O75907 488 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 RARRES1P49788 294 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 GPC3P51654 580 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 DEFB103AP81534 67 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 NFX1Q12986 1120 aaKnown RBP23.08■■□□□ 1.29
CLN3-240ENST00000631023 DRP2Q13474 957 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 EMC2Q15006 297 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 ZNF697Q5TEC3 545 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 POTEGQ6S5H5 508 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 RHPN2Q8IUC4 686 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 TIFAQ96CG3 184 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 MTRQ99707 1265 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 ZBED2Q9BTP6 218 aa23.08■■□□□ 1.29
CLN3-240ENST00000631023 NOC2LQ9Y3T9 749 aaKnown RBP23.08■■□□□ 1.29
CLN3-240ENST00000631023 TMEM265A0A087WTH1 108 aa23.07■■□□□ 1.28
CLN3-240ENST00000631023 EIF4BP23588 611 aaKnown RBP23.07■■□□□ 1.28
CLN3-240ENST00000631023 PBX2P40425 430 aa23.07■■□□□ 1.28
CLN3-240ENST00000631023 RABGGTBP53611 331 aa23.07■■□□□ 1.28
CLN3-240ENST00000631023 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.07■■□□□ 1.28
CLN3-240ENST00000631023 ZNF410Q86VK4 478 aa23.07■■□□□ 1.28
CLN3-240ENST00000631023 MYOCDQ8IZQ8 938 aa23.07■■□□□ 1.28
CLN3-240ENST00000631023 PSPC1Q8WXF1 523 aaKnown RBP23.07■■□□□ 1.28
CLN3-240ENST00000631023 A0A087WWV3 80 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms