RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 KINO60870 393 aaKnown RBP16■□□□□ 0.15
SNX1-214ENST00000625244 RPS6KA5O75582 802 aa16■□□□□ 0.15
SNX1-214ENST00000625244 CXCL14O95715 111 aa16■□□□□ 0.15
SNX1-214ENST00000625244 KCNA2P16389 499 aa16■□□□□ 0.15
SNX1-214ENST00000625244 CCDC149Q6ZUS6 474 aa16■□□□□ 0.15
SNX1-214ENST00000625244 ZNF589Q86UQ0 364 aaPredicted RBP16■□□□□ 0.15
SNX1-214ENST00000625244 IQCA1Q86XH1 822 aa16■□□□□ 0.15
SNX1-214ENST00000625244 HOMER1Q86YM7 354 aa16■□□□□ 0.15
SNX1-214ENST00000625244 SLC39A11Q8N1S5 342 aa16■□□□□ 0.15
SNX1-214ENST00000625244 NME8Q8N427 588 aa16■□□□□ 0.15
SNX1-214ENST00000625244 GIMAP8Q8ND71 665 aaPredicted RBP16■□□□□ 0.15
SNX1-214ENST00000625244 SLC22A17Q8WUG5 538 aa16■□□□□ 0.15
SNX1-214ENST00000625244 AUTS2Q8WXX7 1259 aa16■□□□□ 0.15
SNX1-214ENST00000625244 ZSCAN10Q96SZ4 725 aaPredicted RBP16■□□□□ 0.15
SNX1-214ENST00000625244 PCYT2Q99447 389 aa16■□□□□ 0.15
SNX1-214ENST00000625244 RNF41Q9H4P4 317 aaPredicted RBP16■□□□□ 0.15
SNX1-214ENST00000625244 IGSF9Q9P2J2 1179 aa16■□□□□ 0.15
SNX1-214ENST00000625244 DENND4AQ7Z401 1863 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 GLULP15104 373 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 PLCB4Q15147 1175 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 CCDC178Q5BJE1 867 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 GPR149Q86SP6 731 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 POTEDQ86YR6 584 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 PIGSQ96S52 555 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 RTKNQ9BST9 563 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 ELAC1Q9H777 363 aaKnown RBP15.99■□□□□ 0.15
SNX1-214ENST00000625244 MAD2L2Q9UI95 211 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 SIT1Q9Y3P8 196 aa15.99■□□□□ 0.15
SNX1-214ENST00000625244 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.98■□□□□ 0.15
SNX1-214ENST00000625244 SMIM35A0A1B0GVV1 85 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 PRR5-ARHGAP8B1AHC4 643 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 N4BP1O75113 896 aaKnown RBP15.98■□□□□ 0.15
SNX1-214ENST00000625244 ARHGAP8P85298 464 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 MCMDC2Q4G0Z9 681 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 PCNX4Q63HM2 1172 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 NLRX1Q86UT6 975 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 CABP7Q86V35 215 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 LRRC43Q8N309 656 aa15.98■□□□□ 0.15
SNX1-214ENST00000625244 GPR161Q8N6U8 529 aaKnown RBP15.98■□□□□ 0.15
SNX1-214ENST00000625244 CHMP4BQ9H444 224 aaKnown RBP15.98■□□□□ 0.15
SNX1-214ENST00000625244 B4E1Z4 1266 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 NT5C1B-RDH14C9J2C7 533 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 HOXB3P14651 431 aaPredicted RBP15.97■□□□□ 0.15
SNX1-214ENST00000625244 TGM1P22735 817 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 LMNB2Q03252 620 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 LETM2Q2VYF4 491 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 PHLDB3Q6NSJ2 640 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 MTHFD1LQ6UB35 978 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 FAM43BQ6ZT52 329 aaPredicted RBP15.97■□□□□ 0.15
SNX1-214ENST00000625244 PKD2L1Q9P0L9 805 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 ZSWIM5Q9P217 1185 aa15.97■□□□□ 0.15
SNX1-214ENST00000625244 BAZ2BQ9UIF8 2168 aaKnown RBP15.96■□□□□ 0.15
SNX1-214ENST00000625244 PALM3A6NDB9 673 aaPredicted RBP15.96■□□□□ 0.15
SNX1-214ENST00000625244 GPR182O15218 404 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 LRRN2O75325 713 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 METAP2P50579 478 aaKnown RBP eCLIP15.96■□□□□ 0.15
SNX1-214ENST00000625244 COL9A3Q14050 684 aaPredicted RBP15.96■□□□□ 0.15
SNX1-214ENST00000625244 DSC3Q14574 896 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 FAM228AQ86W67 206 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 VPS52Q8N1B4 723 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 SLC44A3Q8N4M1 653 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 TMEM87AQ8NBN3 555 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 GPR152Q8TDT2 470 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 FOXQ1Q9C009 403 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 ZBP1Q9H171 429 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 SFXN1Q9H9B4 322 aa15.96■□□□□ 0.15
SNX1-214ENST00000625244 SETXQ7Z333 2677 aaKnown RBP15.96■□□□□ 0.15
SNX1-214ENST00000625244 SRFP11831 508 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 ITGB5P18084 799 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 MX1P20591 662 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 CLLU1OSQ5K130 101 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 USP17L6PQ6QN14 398 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 KIAA0319LQ8IZA0 1049 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 ABI1Q8IZP0 508 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 GPRASP2Q96D09 838 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 YTHDC1Q96MU7 727 aaKnown RBP15.95■□□□□ 0.14
SNX1-214ENST00000625244 RIOX1Q9H6W3 641 aa15.95■□□□□ 0.14
SNX1-214ENST00000625244 CNOT1A5YKK6 2376 aaKnown RBP15.94■□□□□ 0.14
SNX1-214ENST00000625244 ZNF213O14771 459 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 SPTLC1O15269 473 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 HOXA2O43364 376 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 CYTH3O43739 400 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 KLRC1P26715 233 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 TRAF1Q13077 416 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 BMS1Q14692 1282 aaKnown RBP15.94■□□□□ 0.14
SNX1-214ENST00000625244 ZNF528Q3MIS6 628 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 PPM1JQ5JR12 505 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 ODR4Q5SWX8 454 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 TMEM173Q86WV6 379 aaPredicted RBP15.94■□□□□ 0.14
SNX1-214ENST00000625244 PJA1Q8NG27 643 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 EVI5LQ96CN4 794 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 PPP1R16BQ96T49 567 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 AZI2Q9H6S1 392 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 ARHGEF3Q9NR81 526 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 USP18Q9UMW8 372 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 IRAK3Q9Y616 596 aa15.94■□□□□ 0.14
SNX1-214ENST00000625244 PNMA6FA0A0J9YX94 578 aa15.93■□□□□ 0.14
SNX1-214ENST00000625244 CTSAP10619 480 aa15.93■□□□□ 0.14
SNX1-214ENST00000625244 BCAR1P56945 870 aa15.93■□□□□ 0.14
SNX1-214ENST00000625244 NMIQ13287 307 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms