RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CCDC85BQ15834 202 aaPredicted RBP14.2□□□□□ -0.14
PNKP-217ENST00000625216 PPP4R3AQ6IN85 833 aa14.2□□□□□ -0.14
PNKP-217ENST00000625216 KIAA0319LQ8IZA0 1049 aa14.2□□□□□ -0.14
PNKP-217ENST00000625216 LEO1Q8WVC0 666 aaPredicted RBP14.2□□□□□ -0.14
PNKP-217ENST00000625216 ZBTB10Q96DT7 871 aa14.2□□□□□ -0.14
PNKP-217ENST00000625216 ZNF396Q96N95 335 aaPredicted RBP14.2□□□□□ -0.14
PNKP-217ENST00000625216 IGSF9BQ9UPX0 1349 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 EPOPA6NHQ4 379 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 ZBTB42B2RXF5 422 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 PRPF40AO75400 957 aaKnown RBP14.19□□□□□ -0.14
PNKP-217ENST00000625216 UPP2O95045 317 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 TDP2O95551 362 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 CD52P31358 61 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 TOB1P50616 345 aaPredicted RBP14.19□□□□□ -0.14
PNKP-217ENST00000625216 CEBPZQ03701 1054 aaKnown RBP14.19□□□□□ -0.14
PNKP-217ENST00000625216 ATL3Q6DD88 541 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 FAM20AQ96MK3 541 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 UNC45AQ9H3U1 944 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 AGO3Q9H9G7 860 aaKnown RBP14.19□□□□□ -0.14
PNKP-217ENST00000625216 SUGCTQ9HAC7 445 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 THEGQ9P2T0 379 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 DDX25Q9UHL0 483 aaKnown RBP14.19□□□□□ -0.14
PNKP-217ENST00000625216 PADI3Q9ULW8 664 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 CLIC4Q9Y696 253 aa14.19□□□□□ -0.14
PNKP-217ENST00000625216 WNT7AO00755 349 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 LPXNO60711 386 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 GADD45BO75293 160 aaPredicted RBP14.18□□□□□ -0.14
PNKP-217ENST00000625216 C22orf31O95567 290 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 OATP04181 439 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 TMOD1P28289 359 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 NASPP49321 788 aaPredicted RBP14.18□□□□□ -0.14
PNKP-217ENST00000625216 TMEM62Q0P6H9 643 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 PAK2Q13177 524 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 INF2Q27J81 1249 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 LETM2Q2VYF4 491 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 TJAP1Q5JTD0 557 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 B3GNT9Q6UX72 402 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 MIER3Q7Z3K6 550 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 NEK8Q86SG6 692 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 ETNPPLQ8TBG4 499 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 COL25A1Q9BXS0 654 aaPredicted RBP14.18□□□□□ -0.14
PNKP-217ENST00000625216 RNF216Q9NWF9 866 aaPredicted RBP14.18□□□□□ -0.14
PNKP-217ENST00000625216 KAT6AQ92794 2004 aa14.18□□□□□ -0.14
PNKP-217ENST00000625216 TBX3O15119 743 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 GPR182O15218 404 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 CHMP2AO43633 222 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 ZNF862O60290 1169 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 CRYBB1P53674 252 aaPredicted RBP14.17□□□□□ -0.14
PNKP-217ENST00000625216 MRPS5P82675 430 aaKnown RBP14.17□□□□□ -0.14
PNKP-217ENST00000625216 XKR3Q5GH77 459 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 PIK3AP1Q6ZUJ8 805 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 SPRED2Q7Z698 418 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 MICALL1Q8N3F8 863 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 METTL13Q8N6R0 699 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 FBXO22Q8NEZ5 403 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 SPATA32Q96LK8 384 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 SCAND2PQ9GZW5 306 aaPredicted RBP14.17□□□□□ -0.14
PNKP-217ENST00000625216 CFAP45Q9UL16 551 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 COG5Q9UP83 839 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 RWDD3Q9Y3V2 267 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 CUL9Q8IWT3 2517 aa14.17□□□□□ -0.14
PNKP-217ENST00000625216 TRANK1O15050 2925 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 DKC1O60832 514 aaKnown RBP eCLIP14.16□□□□□ -0.14
PNKP-217ENST00000625216 RPS6KA5O75582 802 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 YEATS4O95619 227 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 RB1P06400 928 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 STAG3L1P0CL83 205 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 PTMSP20962 102 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 CDC42EP1Q00587 391 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 PRKCEQ02156 737 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 PTPAQ15257 358 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 SF3A1Q15459 793 aaKnown RBP14.16□□□□□ -0.14
PNKP-217ENST00000625216 AAK1Q2M2I8 961 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 EPC2Q52LR7 807 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 RILPL1Q5EBL4 403 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 EFCAB12Q6NXP0 572 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 TRMT1LQ7Z2T5 733 aaKnown RBP14.16□□□□□ -0.14
PNKP-217ENST00000625216 RTN4RL1Q86UN2 441 aaPredicted RBP14.16□□□□□ -0.14
PNKP-217ENST00000625216 NPAS4Q8IUM7 802 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 FIBCD1Q8N539 461 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 LINC00301Q8NCQ3 95 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 ASB2Q96Q27 587 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 MAP7D2Q96T17 732 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 C17orf80Q9BSJ5 609 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 NIFKQ9BYG3 293 aaKnown RBP14.16□□□□□ -0.14
PNKP-217ENST00000625216 KCNMB3Q9NPA1 279 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 PRDM6Q9NQX0 595 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 RCOR1Q9UKL0 485 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 MTUS1Q9ULD2 1270 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 GINS2Q9Y248 185 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 GBF1Q92538 1859 aa14.16□□□□□ -0.14
PNKP-217ENST00000625216 H3BNC9 293 aa14.15□□□□□ -0.14
PNKP-217ENST00000625216 CCNT1O60563 726 aaKnown RBP14.15□□□□□ -0.14
PNKP-217ENST00000625216 DGKIO75912 1065 aa14.15□□□□□ -0.14
PNKP-217ENST00000625216 ATP2B1P20020 1258 aa14.15□□□□□ -0.14
PNKP-217ENST00000625216 NFX1Q12986 1120 aaKnown RBP14.15□□□□□ -0.14
PNKP-217ENST00000625216 PPP2R5CQ13362 524 aa14.15□□□□□ -0.14
PNKP-217ENST00000625216 SKIV2LQ15477 1246 aaKnown RBP14.15□□□□□ -0.14
PNKP-217ENST00000625216 TARBP2Q15633 366 aaKnown RBP14.15□□□□□ -0.14
PNKP-217ENST00000625216 PTPROQ16827 1216 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms