RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 DARS2Q6PI48 645 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 SCHIP1Q9P0W5 487 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 ZSWIM5Q9P217 1185 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 GSTA4O15217 222 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 KRT75O95678 551 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 TNNC2P02585 160 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 PCCAP05165 728 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 LRRC24Q50LG9 513 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ODR4Q5SWX8 454 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 TMED8Q6PL24 325 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 RAD9BQ6WBX8 426 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 METTL16Q86W50 562 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 PIK3R5Q8WYR1 880 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 OSBP2Q969R2 916 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 PNKPQ96T60 521 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 KCND1Q9NSA2 647 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 WARS2Q9UGM6 360 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 PCDHB4Q9Y5E5 795 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 A6NJR5 290 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 LPXNO60711 386 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 SRGAP2BP0DMP2 458 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 EIF6P56537 245 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 FAM102BQ5T8I3 360 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 RBM43Q6ZSC3 357 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 ZBTB38Q8NAP3 1195 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 RNF169Q8NCN4 708 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 AIFM3Q96NN9 605 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 APOA1P02647 267 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 CA8P35219 290 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ASPRV1Q53RT3 343 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 DDI1Q8WTU0 396 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 CFAP36Q96G28 342 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ING2Q9H160 280 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ABCA8O94911 1581 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 A0A1W2PQJ5 194 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 PLEKHG3A1L390 1219 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 TRIM49BA6NDI0 452 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 DDX39AO00148 427 aaKnown RBP9.52□□□□□ -0.88
VCL-206ENST00000623461 RPS6KA5O75582 802 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 ATP6V1G2O95670 118 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 SEC24CP53992 1094 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 DMP1Q13316 513 aaPredicted RBP9.52□□□□□ -0.88
VCL-206ENST00000623461 KIAA1755Q5JYT7 1200 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 CCDC137Q6PK04 289 aaKnown RBP9.52□□□□□ -0.88
VCL-206ENST00000623461 RIBC1Q8N443 379 aaPredicted RBP9.52□□□□□ -0.88
VCL-206ENST00000623461 SDR42E1Q8WUS8 393 aa9.52□□□□□ -0.88
VCL-206ENST00000623461 H3BQF6 201 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 HMGB3O15347 200 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 LRRN2O75325 713 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 GNAT1P11488 350 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 SWT1Q5T5J6 900 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 COL23A1Q86Y22 540 aaPredicted RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 NOA1Q8NC60 698 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 DEPTORQ8TB45 409 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 FUCA2Q9BTY2 467 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 TRPM1Q7Z4N2 1603 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 SASH1O94885 1247 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 KRT14P02533 472 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 KRT19P08727 400 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 SRGNP10124 158 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 ARHGEF6Q15052 776 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 CADPS2Q86UW7 1296 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 ALKBH8Q96BT7 664 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 RANBP17Q9H2T7 1088 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 ITGB1BP2Q9UKP3 347 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 ZBBXA8MT70 800 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 FSBPO95073 299 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 KRT4P19013 534 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 ARHGAP22Q7Z5H3 698 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 TBCKQ8TEA7 893 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 TGFBRAP1Q8WUH2 860 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 MTO1Q9Y2Z2 717 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 O00370 1275 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 NOP56O00567 594 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 PLA2G4BP0C869 781 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 PRLRP16471 622 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 TRAPPC11Q7Z392 1133 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 LCA5Q86VQ0 697 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 KRT82Q9NSB4 513 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 TMCC1O94876 653 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 HSPA13P48723 471 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 EPHB1P54762 984 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 DNAJC24Q6P3W2 148 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 RFFLQ8WZ73 363 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 MLXIPLQ9NP71 852 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 DNAJC17Q9NVM6 304 aaKnown RBP9.52□□□□□ -0.89
VCL-206ENST00000623461 RAB21Q9UL25 225 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 PNMA2Q9UL42 364 aa9.52□□□□□ -0.89
VCL-206ENST00000623461 DAB1O75553 588 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 TAF12Q16514 161 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 USH1GQ495M9 461 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 POTEAQ6S8J7 498 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CCDC134Q9H6E4 229 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 AMACRQ9UHK6 382 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 GOLGA8CPA6NN73 597 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 SYCE1LA8MT33 242 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CDH16O75309 829 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 SAMD9LQ8IVG5 1584 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 TAB3Q8N5C8 712 aaPredicted RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 FOXP3Q9BZS1 431 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms