RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RFC5P40937 340 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 TBC1D8BQ0IIM8 1120 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 FAAP100Q0VG06 881 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 E2F4Q16254 413 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 NAALADL2Q58DX5 795 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 RRAGBQ5VZM2 374 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 CCDC73Q6ZRK6 1079 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 LINC01465Q8N7H1 131 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 MRPS27Q92552 414 aaKnown RBP21.97■■□□□ 1.11
UPF3A-211ENST00000618700 DHX38Q92620 1227 aaKnown RBP21.97■■□□□ 1.11
UPF3A-211ENST00000618700 GBP4Q96PP9 640 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 BHMT2Q9H2M3 363 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 DHX33Q9H6R0 707 aaKnown RBP21.97■■□□□ 1.11
UPF3A-211ENST00000618700 PCDHA2Q9Y5H9 948 aa21.97■■□□□ 1.11
UPF3A-211ENST00000618700 IGKV6-21A0A0C4DH24 114 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 ARHGEF35A5YM69 484 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 DCDC2CA8MYV0 355 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 TLR3O15455 904 aaKnown RBP21.96■■□□□ 1.11
UPF3A-211ENST00000618700 MAGEB2O15479 319 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 PTK7Q13308 1070 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 RUFY4Q6ZNE9 571 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 RAD54LQ92698 747 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 WNT8BQ93098 351 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 HTATIP2Q9BUP3 242 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 GOLPH3LQ9H4A5 285 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 PDLIM7Q9NR12 457 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 KCNH3Q9ULD8 1083 aa21.96■■□□□ 1.11
UPF3A-211ENST00000618700 A0A1B0GVL5 298 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 SMIM35A0A1B0GVV1 85 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 MAFO75444 373 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-211ENST00000618700 PLA2G4BP0C869 781 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 STAT6P42226 847 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 SLC12A3P55017 1021 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 RBL2Q08999 1139 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 TRIM71Q2Q1W2 868 aaKnown RBP21.95■■□□□ 1.1
UPF3A-211ENST00000618700 PDILTQ8N807 584 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 FSIP1Q8NA03 581 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 CCDC43Q96MW1 224 aaKnown RBP21.95■■□□□ 1.1
UPF3A-211ENST00000618700 TBX21Q9UL17 535 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 NOD1Q9Y239 953 aa21.95■■□□□ 1.1
UPF3A-211ENST00000618700 PDE4DIPQ5VU43 2346 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 GADD45BO75293 160 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-211ENST00000618700 DGAT1O75907 488 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 CYP2C9P11712 490 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 NDUFA8P51970 172 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 POLGP54098 1239 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-211ENST00000618700 TAF2Q6P1X5 1199 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 RPAINQ86UA6 219 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 EXOC8Q8IYI6 725 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 SYT2Q8N9I0 419 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-211ENST00000618700 SLC7A3Q8WY07 619 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 LARP4BQ92615 738 aaKnown RBP21.94■■□□□ 1.1
UPF3A-211ENST00000618700 JPH2Q9BR39 696 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-211ENST00000618700 PANK2Q9BZ23 570 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 XPNPEP1Q9NQW7 623 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 PCDHB13Q9Y5F0 798 aa21.94■■□□□ 1.1
UPF3A-211ENST00000618700 GOLGA6L4A6NEF3 574 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 POLR2DO15514 142 aaKnown RBP21.93■■□□□ 1.1
UPF3A-211ENST00000618700 GAS2O43903 313 aaKnown RBP21.93■■□□□ 1.1
UPF3A-211ENST00000618700 USO1O60763 962 aaKnown RBP21.93■■□□□ 1.1
UPF3A-211ENST00000618700 CLTBP09497 229 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 MCM6Q14566 821 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 EMC2Q15006 297 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 PADI6Q6TGC4 694 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 IQUBQ8NA54 791 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 RETREG2Q8NC44 543 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 DHX58Q96C10 678 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 PYM1Q9BRP8 204 aaKnown RBP21.93■■□□□ 1.1
UPF3A-211ENST00000618700 CUEDC2Q9H467 287 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 ATP6V0A4Q9HBG4 840 aa21.93■■□□□ 1.1
UPF3A-211ENST00000618700 CYP11B2P19099 503 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 CLCN3P51790 818 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 RINT1Q6NUQ1 792 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 EFCAB12Q6NXP0 572 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 KIAA0319LQ8IZA0 1049 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 LRRC71Q8N4P6 559 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 MTRQ99707 1265 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 RUSC1Q9BVN2 902 aa21.92■■□□□ 1.1
UPF3A-211ENST00000618700 BMP2KQ9NSY1 1161 aaPredicted RBP21.92■■□□□ 1.1
UPF3A-211ENST00000618700 ACTN4O43707 911 aaKnown RBP21.91■■□□□ 1.1
UPF3A-211ENST00000618700 CAND2O75155 1236 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 PRPF40AO75400 957 aaKnown RBP21.91■■□□□ 1.1
UPF3A-211ENST00000618700 RPLP2P05387 115 aaKnown RBP21.91■■□□□ 1.1
UPF3A-211ENST00000618700 SSBP05455 408 aaKnown RBP eCLIP21.91■■□□□ 1.1
UPF3A-211ENST00000618700 SYKP43405 635 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 UBE2HP62256 183 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 DRP2Q13474 957 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 TPRNQ4KMQ1 711 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 C1orf186Q6ZWK4 172 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 METTL13Q8N6R0 699 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 CAGE1Q8TC20 777 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 NOC4LQ9BVI4 516 aaKnown RBP21.91■■□□□ 1.1
UPF3A-211ENST00000618700 MAGEF1Q9HAY2 307 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 KCND2Q9NZV8 630 aa21.91■■□□□ 1.1
UPF3A-211ENST00000618700 EVPLQ92817 2033 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 KIAA0355O15063 1070 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 GUCY2CP25092 1073 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 TMOD1P28289 359 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 ARSHQ5FYA8 562 aa21.9■■□□□ 1.1
UPF3A-211ENST00000618700 SH3RF1Q7Z6J0 888 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms