RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CCDC196A0A1B0GTZ2 297 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 TBKBP1A7MCY6 615 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 PROB1E7EW31 1015 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 MEIS1O00470 390 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 SGSM2O43147 1006 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 GFRA3O60609 400 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 PPFIA3O75145 1194 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 ATG7O95352 703 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 DNAJB1P25685 340 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 CHMLP26374 656 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 KLRC1P26715 233 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 AVPR2P30518 371 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 GTF2F1P35269 517 aaKnown RBP eCLIP7.15□□□□□ -1.262e-8■■■□□ 18.7
CUX1-220ENST00000607092 ADCY7P51828 1080 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 RCAN1P53805 252 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 NAPAP54920 295 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 FAM189BP81408 668 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 SETQ01105 290 aaPredicted RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 ANKRD54Q6NXT1 300 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 PDXDC2PQ6P474 469 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 ELMSAN1Q6PJG2 1045 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 TMTC3Q6ZXV5 915 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 TMC7Q7Z402 723 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 HEATR3Q7Z4Q2 680 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 RTN4RL1Q86UN2 441 aaPredicted RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 SGMS1Q86VZ5 419 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 CKAP2LQ8IYA6 745 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 SMAP1Q8IYB5 467 aaPredicted RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 PIP4P2Q8N4L2 257 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 SRBD1Q8N5C6 995 aaKnown RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 FANCBQ8NB91 859 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 COLGALT1Q8NBJ5 622 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 PRSS33Q8NF86 280 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 LINC01599Q8WXQ3 324 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 ATOH1Q92858 354 aaPredicted RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 ADAM2Q99965 735 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 TCF25Q9BQ70 676 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 OSBPL7Q9BZF2 842 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 ERVK-5Q9HDB9 667 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 RIC8AQ9NPQ8 531 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 ZNF302Q9NR11 478 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 DACT1Q9NYF0 836 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 PKD2L1Q9P0L9 805 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 BARX2Q9UMQ3 279 aaPredicted RBP7.15□□□□□ -1.26
CUX1-220ENST00000607092 SORCS3Q9UPU3 1222 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 GINS2Q9Y248 185 aa7.15□□□□□ -1.26
CUX1-220ENST00000607092 USP34Q70CQ2 3546 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 IGKV6D-21A0A0A0MT36 114 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 C9IYK1 514 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 SH2B2O14492 632 aaPredicted RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 FSCN2O14926 492 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 GALR2O43603 387 aaPredicted RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 CSPG5O95196 566 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 GLP2RO95838 553 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 EOMESO95936 686 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 PSAPP07602 524 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 SKIP12755 728 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 PDE4AP27815 886 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 SREBF1P36956 1147 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 TECP42680 631 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 ALDH7A1P49419 539 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 ANTXR2P58335 489 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 TMEM62Q0P6H9 643 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 SMC1AQ14683 1233 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 ATAT1Q5SQI0 421 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 ZNF746Q6NUN9 644 aaPredicted RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 ABHD15Q6UXT9 468 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 ADGRD2Q7Z7M1 963 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 PPFIBP1Q86W92 1011 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 KIAA0319LQ8IZA0 1049 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 BICD2Q8TD16 824 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 ACSF2Q96CM8 615 aaPredicted RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 TMEM169Q96HH4 297 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 PCYT2Q99447 389 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 LARP6Q9BRS8 491 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 INO80BQ9C086 356 aaPredicted RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 ADAM7Q9H2U9 754 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 C5orf42Q9H799 3197 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 AGO4Q9HCK5 861 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 TYW1Q9NV66 732 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 SPG21Q9NZD8 308 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 DPP7Q9UHL4 492 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 ST3GAL5Q9UNP4 418 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 USTQ9Y2C2 406 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 NOC2LQ9Y3T9 749 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 SUPT16HQ9Y5B9 1047 aaKnown RBP7.14□□□□□ -1.27
CUX1-220ENST00000607092 NCOR2Q9Y618 2525 aa7.14□□□□□ -1.27
CUX1-220ENST00000607092 CEP250Q9BV73 2442 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 IPO5O00410 1097 aaKnown RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 PER2O15055 1255 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 PLEKHA8P1O95397 391 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 IGHDP01880 384 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 GNA11P29992 359 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 CLCN5P51795 746 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 POLGP54098 1239 aaPredicted RBP7.13□□□□□ -1.27
CUX1-220ENST00000607092 ERVFC1P60507 584 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 PTH1RQ03431 593 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 TCF15Q12870 199 aa7.13□□□□□ -1.27
CUX1-220ENST00000607092 NONOQ15233 471 aaKnown RBP eCLIP7.13□□□□□ -1.271e-6■■■■□ 21
CUX1-220ENST00000607092 UBE2SQ16763 222 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms