RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 EFHBQ8N7U6 833 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 FANCBQ8NB91 859 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 SMRP1Q8NCR6 262 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 CDHR1Q96JP9 859 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 MAP3K14Q99558 947 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 SDF4Q9BRK5 362 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 PLVAPQ9BX97 442 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 AGO4Q9HCK5 861 aaKnown RBP9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 ERVK-5Q9HDB9 667 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 BRPF3Q9ULD4 1205 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 LRFN2Q9ULH4 789 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 PCDHA2Q9Y5H9 948 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 FAM86B1E9PN63 330 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 M0QZ92 97 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 BACH1O14867 736 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 NCK2O43639 380 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 RPS6KA5O75582 802 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 EYA4O95677 639 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 PDGFBP01127 241 aaPredicted RBP9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 VTNP04004 478 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 FAM86B2P0C5J1 330 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 ATP4AP20648 1035 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 SMARCA1P28370 1054 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 GNAQP50148 359 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 JAKMIP3Q5VZ66 844 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 PLPP4Q5VZY2 271 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 KIAA0319LQ8IZA0 1049 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 FEZF2Q8TBJ5 459 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 P2RX5Q93086 422 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 ASIC4Q96FT7 647 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 OSMRQ99650 979 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 ADAM2Q99965 735 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 LZTS2Q9BRK4 669 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 ANO3Q9BYT9 981 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 TLE6Q9H808 572 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 TYW1Q9NV66 732 aaKnown RBP9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 DLL3Q9NYJ7 618 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 RALYQ9UKM9 306 aaKnown RBP9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 ST3GAL5Q9UNP4 418 aa9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 V9GY48 417 aaPredicted RBP9.86□□□□□ -0.83
SHKBP1-220ENST00000599716 SMIM35A0A1B0GVV1 85 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 DENND3A2RUS2 1198 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 HIDE1A8MVS5 230 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 ZBTB42B2RXF5 422 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 LOC730098B7Z3J9 87 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 FGF18O76093 207 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 STAG3L1P0CL83 205 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 CPA1P15085 419 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 FGFR4P22455 802 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 ZNF76P36508 570 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 SARSP49591 514 aaKnown RBP9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 FUT2Q10981 343 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 CEP55Q53EZ4 464 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 SWSAP1Q6NVH7 229 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 PLPPR4Q7Z2D5 763 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 FAM228AQ86W67 206 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 THNSL1Q8IYQ7 743 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 COLGALT1Q8NBJ5 622 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 TMEM87BQ96K49 555 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 ESYT1Q9BSJ8 1104 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 FTHL17Q9BXU8 183 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 SMOC2Q9H3U7 446 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 ANO2Q9NQ90 1003 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 NAP1L2Q9ULW6 460 aaPredicted RBP9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 PCDHB7Q9Y5E2 793 aa9.85□□□□□ -0.83
SHKBP1-220ENST00000599716 NFASCO94856 1347 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 SMCO2A6NFE2 343 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 C9IYK1 514 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 MEIS1O00470 390 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 DHX15O43143 795 aaKnown RBP9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 WEE2P0C1S8 567 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 CDC27P30260 824 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 LIFRP42702 1097 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 CLCN3P51790 818 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 ADCY7P51828 1080 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 COASYQ13057 564 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 NECTIN1Q15223 517 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 ADCK5Q3MIX3 580 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 KANK3Q6NY19 840 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 PDXDC2PQ6P474 469 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 APOA5Q6Q788 366 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 ABHD15Q6UXT9 468 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 LRRC55Q6ZSA7 311 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 PLA2G4DQ86XP0 818 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 CKAP2LQ8IYA6 745 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 METTL13Q8N6R0 699 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 RNF169Q8NCN4 708 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 RASGRP4Q8TDF6 673 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 ATP8B4Q8TF62 1192 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 GJA10Q969M2 543 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 CWH43Q9H720 699 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 RIC8AQ9NPQ8 531 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 ZNF302Q9NR11 478 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 TSHZ2Q9NRE2 1034 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 IGSF5Q9NSI5 407 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 FAM217BQ9NTX9 383 aaPredicted RBP9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 RNF19AQ9NV58 838 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 IGF2RP11717 2491 aa9.84□□□□□ -0.83
SHKBP1-220ENST00000599716 KDM3AQ9Y4C1 1321 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 MYH9P35579 1960 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms