RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SYN1P17600 705 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 CMA1P23946 247 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 UBA7P41226 1012 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 CLCN3P51790 818 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 XKR9Q5GH70 373 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 HAUS3Q68CZ6 603 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 RINT1Q6NUQ1 792 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 EFCAB12Q6NXP0 572 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 KCTD17Q8N5Z5 321 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 TMEM87AQ8NBN3 555 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 ERMNQ8TAM6 284 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 DPF3Q92784 378 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 CEP170P1Q96L14 293 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 RUSC1Q9BVN2 902 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 SCAND2PQ9GZW5 306 aaPredicted RBP11.8□□□□□ -0.52
LIG1-210ENST00000596332 BHMT2Q9H2M3 363 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 TMEM39AQ9NV64 488 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 ZMYND8Q9ULU4 1186 aaPredicted RBP11.8□□□□□ -0.52
LIG1-210ENST00000596332 STK24Q9Y6E0 443 aa11.8□□□□□ -0.52
LIG1-210ENST00000596332 A0A1W2PQ27 194 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 A0A1W2PQ64 194 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 A0A1W2PQD8 194 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 MAGEB2O15479 319 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 NBNO60934 754 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 IQCF3P0C7M6 154 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 GNAT1P11488 350 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 CYP11B2P19099 503 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 ARL2P36404 184 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 ME1P48163 572 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 MFSD5Q6N075 450 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 OTUD6AQ7L8S5 288 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 KSR1Q8IVT5 923 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 ENGASEQ8NFI3 743 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 TMEM40Q8WWA1 233 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 RAD54LQ92698 747 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 SCLYQ96I15 445 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 PPP1R12CQ9BZL4 782 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 PRO3102Q9H379 93 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 HIPK3Q9H422 1215 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 GPRC5CQ9NQ84 441 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 PPME1Q9Y570 386 aa11.79□□□□□ -0.52
LIG1-210ENST00000596332 NPHP3-ACAD11A0A0J9YXS1 232 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 A0A1B0GVL5 298 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 H0YGN5 161 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 PITPNM1O00562 1244 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 TLR3O15455 904 aaKnown RBP11.78□□□□□ -0.52
LIG1-210ENST00000596332 VTNP04004 478 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 PLA2G4BP0C869 781 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 NCLP19338 710 aaKnown RBP11.78□□□□□ -0.52
LIG1-210ENST00000596332 RFC5P40937 340 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 CCL23P55773 120 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 TBC1D8BQ0IIM8 1120 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 SNW1Q13573 536 aaKnown RBP11.78□□□□□ -0.52
LIG1-210ENST00000596332 MCM6Q14566 821 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 TAF2Q6P1X5 1199 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 PADI6Q6TGC4 694 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 CAGE1Q8TC20 777 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 ASAP3Q8TDY4 903 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 PRPF31Q8WWY3 499 aaKnown RBP11.78□□□□□ -0.52
LIG1-210ENST00000596332 BSNDQ8WZ55 320 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 BADQ92934 168 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 TMEM143Q96AN5 459 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 GDF15Q99988 308 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 NT5C3AQ9H0P0 336 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 IFT122Q9HBG6 1241 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 BMP2KQ9NSY1 1161 aaPredicted RBP11.78□□□□□ -0.52
LIG1-210ENST00000596332 DNM3Q9UQ16 869 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 LTBP2Q14767 1821 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 ARID2Q68CP9 1835 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 KDM3AQ9Y4C1 1321 aa11.78□□□□□ -0.52
LIG1-210ENST00000596332 SIP14410 1827 aa11.77□□□□□ -0.52
LIG1-210ENST00000596332 ACTN4O43707 911 aaKnown RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 DGAT1O75907 488 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 CXCL10P02778 98 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 CSF2RAP15509 400 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 SELPP16109 830 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 PFKFB1P16118 471 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 GLRA2P23416 452 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 THPOP40225 353 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 GPC3P51654 580 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 NDUFA8P51970 172 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 MLLT1Q03111 559 aaPredicted RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 TMEM62Q0P6H9 643 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 EMC2Q15006 297 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 ZRSR1Q15695 479 aaKnown RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 LONRF3Q496Y0 759 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 NME8Q8N427 588 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 PDILTQ8N807 584 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 DNAJC19Q96DA6 116 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 ZNF668Q96K58 619 aaPredicted RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 FIZ1Q96SL8 496 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 FAM49AQ9H0Q0 323 aaPredicted RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 AGO3Q9H9G7 860 aaKnown RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 SUGCTQ9HAC7 445 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 KBTBD4Q9NVX7 518 aa11.77□□□□□ -0.53
LIG1-210ENST00000596332 RANBP2P49792 3224 aaKnown RBP11.77□□□□□ -0.53
LIG1-210ENST00000596332 MYMKA6NI61 221 aa11.76□□□□□ -0.53
LIG1-210ENST00000596332 RSPH10B2B2RC85 870 aa11.76□□□□□ -0.53
LIG1-210ENST00000596332 POLR2DO15514 142 aaKnown RBP11.76□□□□□ -0.53
LIG1-210ENST00000596332 USO1O60763 962 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms