RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 BCAMP50895 628 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 CDCA2Q69YH5 1023 aaPredicted RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 CNKSR1Q969H4 720 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 ARPP21Q9UBL0 812 aaPredicted RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 SEC63Q9UGP8 760 aaKnown RBP13.24□□□□□ -0.29
LIG1-207ENST00000594759 DCTN4Q9UJW0 460 aa13.24□□□□□ -0.29
LIG1-207ENST00000594759 TECPR2O15040 1411 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SALL1Q9NSC2 1324 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 O00370 1275 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 PCCAP05165 728 aaPredicted RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 ADCY8P40145 1251 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 AP2B1P63010 937 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SMIM5Q71RC9 77 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 IFNL3Q8IZI9 196 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 VPS37BQ9H9H4 285 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SCINQ9Y6U3 715 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 ADCY3O60266 1144 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 HAUS5O94927 633 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SP100P23497 879 aaPredicted RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 TNFRSF8P28908 595 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 GYG1P46976 350 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 PTDSS1P48651 473 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 NCALDP61601 193 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 CETN1Q12798 172 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SPARCL1Q14515 664 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 LBRQ14739 615 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 SLC5A9Q2M3M2 681 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 TRAPPC3LQ5T215 181 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 MTHFD1LQ6UB35 978 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 OLFML1Q6UWY5 402 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 CELF4Q9BZC1 486 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.23□□□□□ -0.295e-7■■■■□ 21.5
LIG1-207ENST00000594759 TMCO1Q9UM00 188 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 REXO2Q9Y3B8 237 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 ARHGEF28Q8N1W1 1705 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 WDR91A4D1P6 747 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 RNF225M0QZC1 329 aaPredicted RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 HNRNPRO43390 633 aaKnown RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 FGFR4P22455 802 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 MCL1Q07820 350 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 CAPN12Q6ZSI9 719 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 NANOGNBQ7Z5D8 188 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 LPIN2Q92539 896 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 CDCA7Q9BWT1 371 aaPredicted RBP13.23□□□□□ -0.29
LIG1-207ENST00000594759 TLR10Q9BXR5 811 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SENP2Q9HC62 589 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 MCM9Q9NXL9 1143 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 KNDC1Q76NI1 1749 aa13.23□□□□□ -0.29
LIG1-207ENST00000594759 SNX3O60493 162 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 STAMBPO95630 424 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 VIL1P09327 827 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 CTNNA2P26232 953 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 PCYT1AP49585 367 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 LRRC36Q1X8D7 754 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 PARP10Q53GL7 1025 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 EPM2AIP1Q7L775 607 aaPredicted RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 AGXT2Q9BYV1 514 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 CRNKL1Q9BZJ0 848 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 CYP39A1Q9NYL5 469 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 PLAGL2Q9UPG8 496 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 RASA4BC9J798 803 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 RASA4O43374 803 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 LINGO3P0C6S8 592 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 STAT1P42224 750 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 GJA8P48165 433 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 ADARP55265 1226 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 ERVK-9P63128 1117 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 PLCB3Q01970 1234 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 RBM26Q5T8P6 1007 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 NT5DC1Q5TFE4 455 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 SCG3Q8WXD2 468 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 MPHOSPH6Q99547 160 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 WDR35Q9P2L0 1181 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 DIP2AQ14689 1571 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 RCCD1A6NED2 376 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 CCDC22O60826 627 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 E2F6O75461 281 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 R3HDM1Q15032 1099 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 C10orf76Q5T2E6 689 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 CYP4F22Q6NT55 531 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 FAM228AQ86W67 206 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 TRIML2Q8N7C3 387 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 MPP4Q96JB8 637 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 PABPC3Q9H361 631 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 TYW1Q9NV66 732 aaKnown RBP13.22□□□□□ -0.29
LIG1-207ENST00000594759 TMOD2Q9NZR1 351 aa13.22□□□□□ -0.29
LIG1-207ENST00000594759 F8VZ95 297 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 PODXLO00592 558 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 KLRC1P26715 233 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 TXKP42681 527 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 PICALMQ13492 652 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 C1orf146Q5VVC0 180 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 ADSSL1Q8N142 457 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 ZFAND2BQ8WV99 257 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 NR1H4Q96RI1 486 aaPredicted RBP13.21□□□□□ -0.29
LIG1-207ENST00000594759 ADAM22Q9P0K1 906 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 TNKSO95271 1327 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 SPECC1L-ADORA2AF8WAN1 911 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 OATP04181 439 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 PDE6AP16499 860 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms