RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GAS2O43903 313 aaKnown RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 MAFO75444 373 aaPredicted RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 BMP15O95972 392 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 SPATA31C1P0DKV0 1188 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 XRCC6P12956 609 aaKnown RBP eCLIP13.3□□□□□ -0.28
LIG3-213ENST00000590630 ATP2A2P16615 1042 aaKnown RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 MUTP22033 750 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 RPA1P27694 616 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 RFC5P40937 340 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 DNM2P50570 870 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 WDR5P61964 334 aaKnown RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 CDC42EP1Q00587 391 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 ARL6IP4Q66PJ3 421 aaKnown RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 FAM109BQ6ICB4 259 aaPredicted RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 DTHD1Q6ZMT9 781 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 FAM43BQ6ZT52 329 aaPredicted RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 CATSPER3Q86XQ3 398 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 LRRC71Q8N4P6 559 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 IGSF22Q8N9C0 903 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 CEP170P1Q96L14 293 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 SH2D3AQ9BRG2 576 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 ZSCAN16Q9H4T2 348 aaPredicted RBP13.3□□□□□ -0.28
LIG3-213ENST00000590630 ANKEF1Q9NU02 776 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 LRWD1Q9UFC0 647 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 MTMR6Q9Y217 621 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 AKT3Q9Y243 479 aa13.3□□□□□ -0.28
LIG3-213ENST00000590630 VTNP04004 478 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 CRYBB1P53674 252 aaPredicted RBP13.29□□□□□ -0.28
LIG3-213ENST00000590630 POLGP54098 1239 aaPredicted RBP13.29□□□□□ -0.28
LIG3-213ENST00000590630 NPEPPSP55786 919 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 RESTQ13127 1097 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
LIG3-213ENST00000590630 KIZQ2M2Z5 673 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 TCTN1Q2MV58 587 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 XKR9Q5GH70 373 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 CCDC43Q96MW1 224 aaKnown RBP13.29□□□□□ -0.28
LIG3-213ENST00000590630 OSBPL7Q9BZF2 842 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 DHX33Q9H6R0 707 aaKnown RBP13.29□□□□□ -0.28
LIG3-213ENST00000590630 GINS2Q9Y248 185 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 MYO9BQ13459 2157 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 TTC3P53804 2025 aa13.29□□□□□ -0.28
LIG3-213ENST00000590630 TMEM265A0A087WTH1 108 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 GPR32O75388 356 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 MED24O75448 989 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 DNAJB2P25686 324 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 NLRP11P59045 1033 aaKnown RBP13.28□□□□□ -0.28
LIG3-213ENST00000590630 PAK2Q13177 524 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 RAB30Q15771 203 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 ODR4Q5SWX8 454 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 ZNF579Q8NAF0 562 aaKnown RBP13.28□□□□□ -0.28
LIG3-213ENST00000590630 NACC1Q96RE7 527 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 FTHL17Q9BXU8 183 aa13.28□□□□□ -0.28
LIG3-213ENST00000590630 AGO3Q9H9G7 860 aaKnown RBP13.28□□□□□ -0.28
LIG3-213ENST00000590630 DBR1Q9UK59 544 aaKnown RBP13.28□□□□□ -0.28
LIG3-213ENST00000590630 COL6A3P12111 3177 aa13.27□□□□□ -0.28
LIG3-213ENST00000590630 GRXCR1A8MXD5 290 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 ZBTB39O15060 712 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 DGAT1O75907 488 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 AMHP03971 560 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 CD52P31358 61 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 CCT6AP40227 531 aaKnown RBP13.27□□□□□ -0.29
LIG3-213ENST00000590630 RARRES1P49788 294 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 GPC3P51654 580 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 DRP2Q13474 957 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 EMC2Q15006 297 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 SF3A1Q15459 793 aaKnown RBP13.27□□□□□ -0.29
LIG3-213ENST00000590630 IL17AQ16552 155 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 KRT79Q5XKE5 535 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 POTEGQ6S5H5 508 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 HERC6Q8IVU3 1022 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 SNX29Q8TEQ0 813 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 PIGOQ8TEQ8 1089 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 TMEM40Q8WWA1 233 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 TCP11Q8WWU5 503 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 OSMRQ99650 979 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 PBX4Q9BYU1 374 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 ADAMTS10Q9H324 1103 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 CDHR5Q9HBB8 845 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 SUCLA2Q9P2R7 463 aaPredicted RBP13.27□□□□□ -0.29
LIG3-213ENST00000590630 MSRAQ9UJ68 235 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 PADI3Q9ULW8 664 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 PCDHA11Q9Y5I1 949 aa13.27□□□□□ -0.29
LIG3-213ENST00000590630 VWA3AA6NCI4 1184 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 GPR182O15218 404 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 RPS6KA5O75582 802 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 EIF4BP23588 611 aaKnown RBP13.26□□□□□ -0.29
LIG3-213ENST00000590630 DEFB103AP81534 67 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 ZNF697Q5TEC3 545 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 ZNF410Q86VK4 478 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 NLRP7Q8WX94 980 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 PSPC1Q8WXF1 523 aaKnown RBP13.26□□□□□ -0.29
LIG3-213ENST00000590630 TIFAQ96CG3 184 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 AK8Q96MA6 479 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 SCLT1Q96NL6 688 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 PPP1R16BQ96T49 567 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 MTRQ99707 1265 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 ATP6V0A4Q9HBG4 840 aa13.26□□□□□ -0.29
LIG3-213ENST00000590630 NOC2LQ9Y3T9 749 aaKnown RBP13.26□□□□□ -0.29
LIG3-213ENST00000590630 EYSQ5T1H1 3165 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms