RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ACTR2	P61160	394 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	KCTD2	Q14681	263 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	CHADL	Q6NUI6	762 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	SEPT14	Q6ZU15	432 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZC3H3	Q8IXZ2	948 aa	Known RBP	16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	GPR161	Q8N6U8	529 aa	Known RBP	16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	GPRC5A	Q8NFJ5	357 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	SMCR8	Q8TEV9	937 aa	Predicted RBP	16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	PARVG	Q9HBI0	331 aa		16.95	■□□□□ 0.3
DDX39A-209	ENST00000589318	HIP1R	O75146	1068 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	RPS6KA5	O75582	802 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	FAM13A	O94988	1023 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SFPQ	P23246	707 aa	Known RBP eCLIP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	OAS2	P29728	719 aa	Known RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	GOLGA8F	Q08AF8	430 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	GOLGA8DP	Q0D2H9	430 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MIIP	Q5JXC2	388 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	E4F1	Q66K89	784 aa	Predicted RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	ANO5	Q75V66	913 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	CCDC60	Q8IWA6	550 aa	Predicted RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	FAM114A1	Q8IWE2	563 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	ANKRD13C	Q8N6S4	541 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	TSG101	Q99816	390 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	TUBGCP2	Q9BSJ2	902 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MAGEC2	Q9UBF1	373 aa	Predicted RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MORF4L1	Q9UBU8	362 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SEL1L	Q9UBV2	794 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	ITIH6	Q6UXX5	1313 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	BACH1	O14867	736 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SORBS3	O60504	671 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	TADA3	O75528	432 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	UBA1	P22314	1058 aa	Known RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	ACTN2	P35609	894 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SMC1A	Q14683	1233 aa	Known RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	LEKR1	Q6ZMV7	388 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	CYFIP1	Q7L576	1253 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	TC2N	Q8N9U0	490 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MORC4	Q8TE76	937 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MYCBP	Q99417	103 aa	Predicted RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SH2D3A	Q9BRG2	576 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	MRPL44	Q9H9J2	332 aa	Known RBP	16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	ANKEF1	Q9NU02	776 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	GABBR1	Q9UBS5	961 aa		16.94	■□□□□ 0.3
DDX39A-209	ENST00000589318	SYNGAP1	Q96PV0	1343 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	POLR3G	O15318	223 aa	Predicted RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	PRPF6	O94906	941 aa	Known RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	ATG7	O95352	703 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	PSAP	P07602	524 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	NMT1	P30419	496 aa	Known RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	HUNK	P57058	714 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	FKBP3	Q00688	224 aa	Known RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	SP4	Q02446	784 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	KCNA1	Q09470	495 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	KNOP1	Q1ED39	458 aa	Known RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	PLA2G4F	Q68DD2	849 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	MYCT1	Q8N699	235 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	TMX1	Q9H3N1	280 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	TRAF3IP3	Q9Y228	551 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	RRP15	Q9Y3B9	282 aa	Known RBP	16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	IGSF9B	Q9UPX0	1349 aa		16.93	■□□□□ 0.3
DDX39A-209	ENST00000589318	SUPT20HL2	P0C7V6	817 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	MAGEA9	P43362	315 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	GCLC	P48506	637 aa	Predicted RBP	16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	NPEPPS	P55786	919 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	EDRF1	Q3B7T1	1238 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	WDR78	Q5VTH9	848 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	SWSAP1	Q6NVH7	229 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	TMEM139	Q8IV31	216 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	NCAPG	Q9BPX3	1015 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	STRA6	Q9BX79	667 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	ARFGAP3	Q9NP61	516 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZMYM2	Q9UBW7	1377 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	GOLGA6L9	A6NEM1	432 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318		B4DLN1	442 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	EIF3D	O15371	548 aa	Known RBP eCLIP	16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	USO1	O60763	962 aa	Known RBP	16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	FARP2	O94887	1054 aa	Predicted RBP	16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	GCNT3	O95395	438 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	TUBB4B	P68371	445 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	UBXN1	Q04323	297 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	PPP4R3CP	Q6ZMV5	832 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	EEPD1	Q7L9B9	569 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZNF720	Q7Z2F6	126 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	C10orf67	Q8IYJ2	551 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	ATP6V0A1	Q93050	837 aa		16.92	■□□□□ 0.3
DDX39A-209	ENST00000589318	IGKV6D-21	A0A0A0MT36	114 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	PPP1R37	O75864	691 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	ARIH2	O95376	493 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	FGFR1OP	O95684	399 aa	Known RBP	16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	GYPC	P04921	128 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	TGFB3	P10600	412 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	MTIF2	P46199	727 aa	Known RBP	16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	CCNA1	P78396	465 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	ODR4	Q5SWX8	454 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	CC2D1A	Q6P1N0	951 aa	Predicted RBP	16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	RASAL3	Q86YV0	1011 aa		16.91	■□□□□ 0.3
DDX39A-209	ENST00000589318	CEP63	Q96MT8	703 aa		16.91	■□□□□ 0.3

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms