RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 MYH9P35579 1960 aaKnown RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 EML1O00423 815 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 ENPP3O14638 875 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 YWHABP31946 246 aaKnown RBP12.18□□□□□ -0.46
CLIP3-203ENST00000586457 TECP42680 631 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 CTTNQ14247 550 aaKnown RBP12.18□□□□□ -0.46
CLIP3-203ENST00000586457 XKR9Q5GH70 373 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 SLC17A8Q8NDX2 589 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 NEK9Q8TD19 979 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 PPM1EQ8WY54 764 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 TOP1MTQ969P6 601 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 DYDC2Q96IM9 177 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 OSMRQ99650 979 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 LXNQ9BS40 222 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 GCOM2Q9BZD3 368 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-203ENST00000586457 INO80BQ9C086 356 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-203ENST00000586457 TSPYL2Q9H2G4 693 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-203ENST00000586457 CYP26B1Q9NR63 512 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 VAV3Q9UKW4 847 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 PPME1Q9Y570 386 aa12.18□□□□□ -0.46
CLIP3-203ENST00000586457 KDM3AQ9Y4C1 1321 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 ZBTB42B2RXF5 422 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 HSP90AA1P07900 732 aaKnown RBP12.17□□□□□ -0.46
CLIP3-203ENST00000586457 OR52Z1P0C646 297 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 PDCP20941 246 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 RFC5P40937 340 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 RHPN2Q8IUC4 686 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 C4orf19Q8IY42 314 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 MAFAQ8NHW3 353 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-203ENST00000586457 TCP11Q8WWU5 503 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 EIF2AK1Q9BQI3 630 aaKnown RBP12.17□□□□□ -0.46
CLIP3-203ENST00000586457 SH2D3AQ9BRG2 576 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 AGO3Q9H9G7 860 aaKnown RBP12.17□□□□□ -0.46
CLIP3-203ENST00000586457 RGL1Q9NZL6 768 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 SUCLA2Q9P2R7 463 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-203ENST00000586457 MTUS1Q9ULD2 1270 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 ST3GAL5Q9UNP4 418 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 PCDHB7Q9Y5E2 793 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 STK24Q9Y6E0 443 aa12.17□□□□□ -0.46
CLIP3-203ENST00000586457 MAFO75444 373 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 EIF4BP23588 611 aaKnown RBP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 U2AF2P26368 475 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 TAP1Q03518 808 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 NCBP1Q09161 790 aaKnown RBP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 TCTN1Q2MV58 587 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 RILPL1Q5EBL4 403 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 PLA2G4FQ68DD2 849 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 B3GNT9Q6UX72 402 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 ANO5Q75V66 913 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 MICALL1Q8N3F8 863 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 FIBCD1Q8N539 461 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 TGS1Q96RS0 853 aaKnown RBP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 C1orf112Q9NSG2 853 aa12.16□□□□□ -0.46
CLIP3-203ENST00000586457 NOC2LQ9Y3T9 749 aaKnown RBP12.16□□□□□ -0.46
CLIP3-203ENST00000586457 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 TMEM150BA6NC51 233 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 LAD1O00515 517 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 ASAP2O43150 1006 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 GAS2O43903 313 aaKnown RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 SLITRK3O94933 977 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 SFPQP23246 707 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 BTG3Q14201 252 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 SKIV2LQ15477 1246 aaKnown RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 TARBP2Q15633 366 aaKnown RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 CCDC85BQ15834 202 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 SPOUT1Q5T280 376 aaKnown RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 HAUS3Q68CZ6 603 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 DTHD1Q6ZMT9 781 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 PSPC1Q8WXF1 523 aaKnown RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 ZNF668Q96K58 619 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-203ENST00000586457 NLRP4Q96MN2 994 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 SAMD11Q96NU1 681 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 MTMR9Q96QG7 549 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 ADAM2Q99965 735 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 OSBPL7Q9BZF2 842 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 CDHR5Q9HBB8 845 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 ANKEF1Q9NU02 776 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 LRWD1Q9UFC0 647 aa12.15□□□□□ -0.46
CLIP3-203ENST00000586457 LAMA2P24043 3122 aaKnown RBP12.14□□□□□ -0.47
CLIP3-203ENST00000586457 LCHNA4D1U4 455 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 VPS37CA5D8V6 355 aaPredicted RBP12.14□□□□□ -0.47
CLIP3-203ENST00000586457 POTEMA6NI47 508 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 GPR32O75388 356 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 CD2BP2O95400 341 aaKnown RBP12.14□□□□□ -0.47
CLIP3-203ENST00000586457 SRGAP2CP0DJJ0 459 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 XRCC6P12956 609 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP3-203ENST00000586457 GPC3P51654 580 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 NPEPPSP55786 919 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 PTGDRQ13258 359 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 TFDP1Q14186 410 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 SLC24A5Q71RS6 500 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 NPAS4Q8IUM7 802 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 ABI1Q8IZP0 508 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 FBXO22Q8NEZ5 403 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 NACC1Q96RE7 527 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 MTRQ99707 1265 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM60Q9H2L4 133 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 ATP6V0A4Q9HBG4 840 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 TUFT1Q9NNX1 390 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 BMP2KQ9NSY1 1161 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms