RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 SMC5Q8IY18 1101 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 CCDC105Q8IYK2 499 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 RRP36Q96EU6 259 aaKnown RBP20.69■□□□□ 0.9
TOP3A-220ENST00000585031 SEMA4AQ9H3S1 761 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 MFSD1Q9H3U5 465 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 AZI2Q9H6S1 392 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 ATP6V0A4Q9HBG4 840 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 PUF60Q9UHX1 559 aaKnown RBP20.69■□□□□ 0.9
TOP3A-220ENST00000585031 PCDHA6Q9UN73 950 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 PCDHA8Q9Y5H6 950 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 CEP250Q9BV73 2442 aa20.69■□□□□ 0.9
TOP3A-220ENST00000585031 ATG7O95352 703 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 AOC1P19801 751 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 IRX6P78412 446 aaPredicted RBP20.68■□□□□ 0.9
TOP3A-220ENST00000585031 ANGPT1Q15389 498 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 KIZQ2M2Z5 673 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 RARS2Q5T160 578 aaKnown RBP20.68■□□□□ 0.9
TOP3A-220ENST00000585031 CES5AQ6NT32 575 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 CATIPQ7Z7H3 387 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 MRPL43Q8N983 215 aaKnown RBP20.68■□□□□ 0.9
TOP3A-220ENST00000585031 CASP10Q92851 521 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 OSMRQ99650 979 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 C2orf16Q68DN1 1984 aa20.68■□□□□ 0.9
TOP3A-220ENST00000585031 KMT2BQ9UMN6 2715 aaPredicted RBP20.68■□□□□ 0.9
TOP3A-220ENST00000585031 WDR81Q562E7 1941 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 IGKV6D-21A0A0A0MT36 114 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 E7EWF7 191 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 HIP1O00291 1037 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 MAFGO15525 162 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 CCNE2O96020 404 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 ATP4AP20648 1035 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 TRDNQ13061 729 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 CHD1LQ86WJ1 897 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 MXRA8Q9BRK3 442 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 TMEM117Q9H0C3 514 aa20.67■□□□□ 0.9
TOP3A-220ENST00000585031 ELAC1Q9H777 363 aaKnown RBP20.67■□□□□ 0.9
TOP3A-220ENST00000585031 RNF216Q9NWF9 866 aaPredicted RBP20.67■□□□□ 0.9
TOP3A-220ENST00000585031 MYH9P35579 1960 aaKnown RBP20.66■□□□□ 0.9
TOP3A-220ENST00000585031 GPR32O75388 356 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 MTHFRP42898 656 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 PUM1Q14671 1186 aaKnown RBP eCLIP20.66■□□□□ 0.9
TOP3A-220ENST00000585031 ZNF654Q8IZM8 581 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 PLCD3Q8N3E9 789 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 DTWD2Q8NBA8 298 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 FLCNQ8NFG4 579 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 LY9Q9HBG7 655 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 USTQ9Y2C2 406 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 NFASCO94856 1347 aa20.66■□□□□ 0.9
TOP3A-220ENST00000585031 OTOGLQ3ZCN5 2332 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 ERICH2A1L162 156 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 GPR182O15218 404 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 IGHDP01880 384 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 LMNAP02545 664 aaKnown RBP20.65■□□□□ 0.9
TOP3A-220ENST00000585031 CLLU1OSQ5K130 101 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 MB21D2Q8IYB1 491 aaPredicted RBP20.65■□□□□ 0.9
TOP3A-220ENST00000585031 SLC39A11Q8N1S5 342 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 AUTS2Q8WXX7 1259 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 PGBD1Q96JS3 809 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 ZNF558Q96NG5 402 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 MAP3K14Q99558 947 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 PPP4R2Q9NY27 417 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 SPG21Q9NZD8 308 aa20.65■□□□□ 0.9
TOP3A-220ENST00000585031 NT5C1B-RDH14C9J2C7 533 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 VTNP04004 478 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 EPCAMP16422 314 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 RXRAP19793 462 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 SMARCA1P28370 1054 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 CRYBB1P53674 252 aaPredicted RBP20.64■□□□□ 0.89
TOP3A-220ENST00000585031 NUCB1Q02818 461 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 SMC1AQ14683 1233 aaKnown RBP20.64■□□□□ 0.89
TOP3A-220ENST00000585031 ABHD15Q6UXT9 468 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 CCDC60Q8IWA6 550 aaPredicted RBP20.64■□□□□ 0.89
TOP3A-220ENST00000585031 TDRD5Q8NAT2 981 aaKnown RBP20.64■□□□□ 0.89
TOP3A-220ENST00000585031 RTP3Q9BQQ7 232 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 AGO4Q9HCK5 861 aaKnown RBP20.64■□□□□ 0.89
TOP3A-220ENST00000585031 DLL3Q9NYJ7 618 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 ZFHX4Q86UP3 3567 aa20.64■□□□□ 0.89
TOP3A-220ENST00000585031 ACACBO00763 2458 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 HBP1O60381 514 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 C22orf31O95567 290 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 KIAA1841Q6NSI8 718 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 TMEM173Q86WV6 379 aaPredicted RBP20.63■□□□□ 0.89
TOP3A-220ENST00000585031 KIAA2013Q8IYS2 634 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 NCOA7Q8NI08 942 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 TNPO1Q92973 898 aaKnown RBP20.63■□□□□ 0.89
TOP3A-220ENST00000585031 CNTNAP3BQ96NU0 1288 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 CNTNAP3Q9BZ76 1288 aa20.63■□□□□ 0.89
TOP3A-220ENST00000585031 SEC63Q9UGP8 760 aaKnown RBP20.63■□□□□ 0.89
TOP3A-220ENST00000585031 SPDYE3A6NKU9 549 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 DDX39AO00148 427 aaKnown RBP20.62■□□□□ 0.89
TOP3A-220ENST00000585031 CXCL14O95715 111 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 EOMESO95936 686 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 KRT17Q04695 432 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 TYW1BQ6NUM6 668 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 ECHDC2Q86YB7 292 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 RAB11FIP4Q86YS3 637 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 CTCFLQ8NI51 663 aaPredicted RBP20.62■□□□□ 0.89
TOP3A-220ENST00000585031 KCNG4Q8TDN1 519 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 SLC22A17Q8WUG5 538 aa20.62■□□□□ 0.89
TOP3A-220ENST00000585031 SDF4Q9BRK5 362 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms