RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 POU3F3P20264 500 aaPredicted RBP6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 POLD1P28340 1107 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 TMPRSS15P98073 1019 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 ADCY2Q08462 1091 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 NFATC3Q12968 1075 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 MOGSQ13724 837 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 MYBPC3Q14896 1274 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 Q6ZUG5 572 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 KLHL36Q8N4N3 616 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 WDR66Q8TBY9 1149 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 ZNF496Q96IT1 587 aaPredicted RBP6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 MS4A5Q9H3V2 200 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 MCM8Q9UJA3 840 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 FBXO10Q9UK96 956 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 CDC42EP3Q9UKI2 254 aa6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 NOC2LQ9Y3T9 749 aaKnown RBP6.35□□□□□ -1.39
SMCHD1-204ENST00000581226 LCHNA4D1U4 455 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 CUTAO60888 179 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 PRPF6O94906 941 aaKnown RBP6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 KCNQ1P51787 676 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 SESN3P58005 492 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 NOLC1Q14978 699 aaKnown RBP eCLIP6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 FBLN7Q53RD9 439 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 GRAMD4Q6IC98 578 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 FRMD7Q6ZUT3 714 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 LHFPL2Q6ZUX7 228 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 ESPNLQ6ZVH7 1005 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 RASSF3Q86WH2 238 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 DDX42Q86XP3 938 aaKnown RBP eCLIP6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 IFNL2Q8IZJ0 200 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 ZDHHC14Q8IZN3 488 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 RPGRQ92834 1020 aaKnown RBP6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 MYL10Q9BUA6 226 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 PARD6AQ9NPB6 346 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 USP36Q9P275 1121 aaKnown RBP6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 ATP8A1Q9Y2Q0 1164 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 COL4A3BPQ9Y5P4 624 aa6.34□□□□□ -1.39
SMCHD1-204ENST00000581226 A0A0G2JNJ9 132 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 GPR39O43194 453 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 AMPD3Q01432 767 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 MAP3K12Q12852 859 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 TOP3AQ13472 1001 aaPredicted RBP6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 RNF219Q5W0B1 726 aaPredicted RBP6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 IQSEC1Q6DN90 963 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 BORAQ6PGQ7 559 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 SPOCD1Q6ZMY3 1216 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 CLRN3Q8NCR9 226 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 ZCRB1Q8TBF4 217 aaKnown RBP6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 AJUBAQ96IF1 538 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 ZDHHC5Q9C0B5 715 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 KATNBL1Q9H079 304 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 SEMA4AQ9H3S1 761 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 Q9UFV3 132 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 ADAM29Q9UKF5 820 aa6.33□□□□□ -1.4
SMCHD1-204ENST00000581226 OTOL1A6NHN0 477 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 KDM1AO60341 852 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 HMGCRP04035 888 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 BCAR1P56945 870 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 PTPROQ16827 1216 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 TMEM200BQ69YZ2 307 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 KIAA1841Q6NSI8 718 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 UNQ6494/PRO21346Q6UXR6 183 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 KANSL1Q7Z3B3 1105 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 REXO1L1PQ8IX06 675 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 KBTBD2Q8IY47 623 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 FERMT2Q96AC1 680 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 MBD6Q96DN6 1003 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 CARD11Q9BXL7 1154 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 XYLT2Q9H1B5 865 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 KCNG1Q9UIX4 513 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 MAGEL2Q9UJ55 1249 aa6.32□□□□□ -1.4
SMCHD1-204ENST00000581226 ELL2O00472 640 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 MAFGO15525 162 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 INHBBP09529 407 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 IBSPP21815 317 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 CSF2RBP32927 897 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 ETV4P43268 484 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 RRADP55042 308 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 USP10Q14694 798 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 EIF4HQ15056 248 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 GPR155Q7Z3F1 870 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 SPATS2Q86XZ4 545 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 PCDH12Q9NPG4 1184 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 KCMF1Q9P0J7 381 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 SAE1Q9UBE0 346 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 ADAMTS20P59510 1910 aa6.31□□□□□ -1.4
SMCHD1-204ENST00000581226 ST20-MTHFSA0A0A6YYL1 179 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 B4GALT4O60513 344 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 MAFO75444 373 aaPredicted RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 ZNF888P0CJ79 500 aaPredicted RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 CDK11BP21127 795 aaKnown RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 STAT5BP51692 787 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 FAPQ12884 760 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 DGKDQ16760 1214 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 ZBTB41Q5SVQ8 909 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 FRMD5Q7Z6J6 570 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 RALYLQ86SE5 291 aaKnown RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 CXorf67Q86X51 503 aaPredicted RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 RTKN2Q8IZC4 609 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 LGI4Q8N135 537 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms